Labeo rohita (rohu): 127178565
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Entry
127178565 CDS
T09007
Symbol
col14a1a
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XIV) chain
KO
K08133
collagen type XIV alpha
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lroh00535
]
127178565 (col14a1a)
Proteoglycans [BR:
lroh00535
]
Extracellular matrix (ECM) proteoglycans
Others
127178565 (col14a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
DUF4959
VWA_3
DUF4992
Arylsulfotran_N
Motif
Other DBs
NCBI-GeneID:
127178565
NCBI-ProteinID:
XP_050987479
LinkDB
All DBs
Position
16:24356036..24525147
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AA seq
1782 aa
AA seq
DB search
MRVSGSRIKLWCPLISLALIQFLTPVSAQVPAPRRLRFKVLSAGKLLVSWKEPKGEYDGY
KFIYSSEPGGETSELQIARGENKAIIKDFNPRKEYSVKVIAVSGNLHSRALQGKYTAEDQ
GSDGDTTQPQRMKEPGPVDEGNEILGVDQFVCTTSAIADIVILVDGSWSIGRINFRLVRM
FLENLVNAFDVGIDKTRIGLAQYSGDPRIEWHLNGFSTKDAVIDAVKNLPYKGGNTLTGL
ALTYILENSFKPESGARSNVPKIGILITDGKSQDDVIPPAQTLRSAGVELFAIGVKNADE
NELKAIASEPEETHVYNVADFSIMSTIVDGLTRKVCDGVEQQDKDISRDSPTEETASPPQ
DLVTSEVTAHSFRVSWTHAPGSVEKYRVVYHPSGADILDEIVVGGTENSVVLQNLNSQTE
YEIAVFAVYRSAASDALRGSEITLALPTVSDLKVYDVTDNSIRVRWRDAEGASGYMILYA
PLSSETTDERELKVDESVTDVELTGLIPDTEYTVTVYAMFGEEASNPATVQETTMSLRPP
RNLRVTEVDHSSVRLNWDAVSNKVKGYRVVYLKTDGVQTSEVVLGPVTNVYLKNLSPLTE
YTVAVFALYNSGQSEALSGGFTTKLVPAPFSMMTSEVTPESFRVSWSHPARDVVLYKMAW
SPTEGGEEREMMLNGAVDSYVIQDLSPFTEYKVSLSAIYKDETESSAVVVLENTLDLTTE
VPTTFPSTTPLVHLGVSNLWVDEETPFSMQVNWEVLDLDVEQYKVTYVSADRTEETVLVL
GNRRSVILQPLLSDTRYKITVTPXYADGESTALSKTSIGKTLALSGPSNLRVSDEWYNRF
RISWDGPQFPTMGYRVIYQPISVSGPALETFVGDDVNTLLILNLLSDTEYSVQVIASYTT
GSSQPLTGNGKTLFLGVNNLSTYQVLSSSMCAQWQPHRHATLYRVVIESLLGDEKEEVRL
GGGTSRQCFFNLSPNTQYKISVYTLLQDTEGPAVTTMATTAPVPTQPPTAPPTTIPPPTI
PPAKEVCKAAKADLAFLVDGSWSIGDDNFQKIIRFLYSTTGALDVIGPEGTQVAIVQFSD
DARTEFKLSSYSDKEALLDAVQRITYKGGNTKTGRAIKHVKETIFAEDAGVRRGIPKVLV
VLTDGRSQDDVNKISKEMQMEGYIIFAIGFADADYGELVNIASKPSERHVFFVDDLDAFK
KIEEQLITFVCEAATATCPSMLMSGNTLAGFRMMEMFGLVEKHYSSVQGVSMEPGTFNSY
PCYRLHKDALVSQPTRYLHPEGLPSDYTISMLFRILPETPQEPFALWEILDKNNEPLVGI
ILDNGGKTLTFFNYDYKGEFQTVTFEGSEIKKIFYGSFHKLHVAISKTAAKVVIDCKTVG
EKSINAAGNITIDGVEVLGRMVRSRGRRDNSAPFQLQMFDIVCSTSWASRDKCCELPGLR
VEEDCPAMPHACTCAQDSKGPPGPSGPPGGPGIRGSRGDRGEPGLTGPQGPPGEIGPPGP
QGPPGPQGPNGLSIQGPPGASGEKGEKGEIGLPGPQGVPGASGGPGRDGPPGQRGLPGKD
GPQGRQGPPGPMGSPGAPGAPGPSGSTGQVGDQGPPGPPGAKGERGERGDMQSQAAVRAI
ARQVCEQLIQSHLSRYNSILNQIPSQSVSVRTVPGPPGEPGRQGPPGPQGEQGPSGRPGF
PGASGQNGRPGERGLPGERGEKGSPGIGTQGPRGPPGPPGPPGEGRTGSQGPPGRPGIQG
SSGRPGTPGSPGPAGPPGYCDQNSCIGYNVGDGNRSNSPMFP
NT seq
5349 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtgtcgggatcgaggattaagctgtggtgtccgcttatctcgctggcactgatt
cagtttctcacccccgtttcggctcaagttccagctccaagaagacttcgatttaaagtt
ctgagtgcaggcaagctacttgtctcatggaaggaaccaaaaggagaatatgatggctac
aaatttatatatagtagtgaaccaggtggcgaaacaagtgagttgcaaattgcaagggga
gagaataaagcaataataaaggattttaatcccaggaaggagtattcagtcaaggttata
gctgtgagtggaaacctgcacagccgagcacttcagggaaaatatactgcagaagaccag
ggcagtgatggagacaccactcagcctcaaagaatgaaagaacctggacctgtagatgag
ggcaatgaaatcttaggagtggatcagtttgtctgcacaacttctgccatcgcggatatt
gtcatcctagtcgatggatcttggagtattgggcgaatcaatttccgtctggttcgcatg
ttccttgaaaacctggtcaatgccttcgacgtgggaatagacaaaacccggattggactg
gcccagtatagcggagatccacgaattgagtggcacttgaatggcttcagcacaaaagat
gcagtaatagatgctgtcaaaaacctgccgtacaagggaggcaacactctcacaggtctt
gctcttacctacatcctggagaacagcttcaaacctgaatccggggctcgtagcaatgtt
cccaaaattggaattctgataaccgacggcaaatcccaagatgacgtcatcccgcccgct
cagaccctgagaagcgctggagtcgagttatttgccattggtgtaaagaatgctgatgag
aacgagctgaaggccatcgcctctgaaccagaggaaacacacgtttataacgtggcagac
ttcagtatcatgagcactatagtggacggcctgaccaggaaggtgtgtgacggagtggag
caacaagacaaagatattagccgagattctccaactgaagagacggcatctccaccccag
gacttggtcacttctgaggtgactgcacatagttttcgtgtgtcctggactcatgcgcct
ggcagtgtggaaaaatatcgggtggtttaccatccatccggagcagatattctggatgag
attgtggtgggtggcacggagaattcagtcgtcctgcagaatttgaactctcagactgaa
tacgagattgctgtgttcgctgtgtaccgcagcgcagcgagtgacgctctcagaggcagc
gagatcacgctggctctaccaacagtgagtgatctcaaggtgtacgatgtgacagacaac
agcattagagtccgctggagggatgcagaaggggcttctgggtacatgatcctttacgct
ccactgagcagtgagactacagatgaaagagagctaaaggtggatgagtcggtgactgat
gtggaactgactggattgattcctgacacagagtacaccgttacggtctatgccatgttc
ggagaggaggccagcaatcccgctactgttcaggagaccaccatgtctcttagacctcca
cgtaacctgcgggtcactgaagttgaccacagctctgtgcgactaaactgggacgcagta
tccaataaggttaagggctaccgtgtcgtgtacttgaagacagatggtgtccagaccagt
gaggtggttttgggtccagtcaccaatgtgtacctgaagaacctgtcacccttaactgaa
tacaccgttgcggtttttgctctctacaattctggtcaatcagaggcgctcagtggcgga
ttcactacaaagcttgtgccagccccgttcagcatgatgacatcagaggtgaccccagag
agtttccgggtcagctggtcacatcctgccagagatgtggtgctctataagatggcctgg
tcacctactgaaggaggagaagaaagagagatgatgctgaatggagctgtggactcgtat
gtgattcaagacctgagtccttttacagagtataaggtgtcactctcagccatctataaa
gacgaaacggagagcagcgctgtggttgtgcttgagaatacattggacttgaccacggaa
gttcccaccacttttccctccactacaccacttgttcatctgggagtgagtaacctgtgg
gtggacgaggagacccccttcagtatgcaagtgaactgggaggtgctggacttagacgtg
gagcagtacaaagtgacatatgtcagtgcagaccgcacagaagaaacagtgttggtcttg
ggaaacagaagaagcgtgatcctgcaacctctcctctcagacacgaggtacaagatcaca
gtgacccctntttatgcagatggagagtccacagctctatccaagacctcgatcggcaaa
acgctggcactttctggacccagtaacctcagggtgtctgatgaatggtataatcgcttc
cgcatcagctgggacggccctcagttccccactatgggttacagagtcatctaccagccc
atctctgtgtcaggtccggctcttgagacgtttgtcggggatgatgtgaacaccctgctg
atcctcaatctgttgagtgacacggagtacagcgttcaggtcatcgcctcctacaccacc
ggctccagccaacccctcaccggcaatggcaaaacattgttcctgggggtgaacaatctc
agcacgtaccaggtgctcagtagcagcatgtgcgcccagtggcaacctcaccgccacgcc
accctctacagagtcgtcattgagtcgctgctcggcgatgagaaagaggaagtgaggctt
ggtggcggtacatccagacagtgcttcttcaatctttcccccaacacccagtacaagatc
agcgtctatactcttttacaggacacagaaggtcctgccgtcaccaccatggcgactact
gctccagtacccacccagccaccaaccgcaccacccaccacgatccctcctcccaccatc
cctccagccaaagaagtttgcaaagcagccaaggcagacctggccttccttgtagacggc
tcctggagtatcggagatgacaactttcagaagatcatccgtttcctgtacagcacaact
ggcgcgcttgatgtgattggccccgagggaacacaggtggccattgttcagttcagtgat
gacgccaggactgagtttaagctcagctcctacagcgataaggaggctctgctggacgct
gtgcagcgcatcacctacaagggaggaaacaccaagacaggtcgagccattaagcatgtg
aaggagaccatcttcgctgaggacgcgggagtaaggaggggcatacctaaagtgctggtg
gtgctcacggacgggcgatctcaagatgatgtcaacaagatctctaaggagatgcagatg
gagggctacatcatctttgccattggcttcgctgatgctgactatggggagctagtgaac
atcgccagcaaacccagtgagagacatgtgttctttgtggacgatctggatgccttcaag
aaaattgaagaacagctcataacttttgtttgtgaggctgcgactgccacttgcccctcg
atgttaatgagcgggaacactttagctggcttccgtatgatggagatgtttggtttggtg
gagaagcactatagcagtgtgcaaggtgtctcaatggagcctgggacttttaacagctac
ccctgctaccgtttacacaaggacgccctcgtctcacagcctaccaggtatctacatcct
gaaggccttccctctgactacactatatctatgctgttccgcatactgcctgaaactcct
caggaaccctttgcattatgggaaatccttgacaaaaacaatgagccactggtgggcatt
atcctggataacggagggaaaacattaacctttttcaattacgactacaagggagaattt
caaacggtgactttcgaaggaagtgaaatcaagaagattttctatggcagtttccataag
cttcatgtggccatcagcaaaactgctgctaaagtggtgatcgactgcaaaacggtggga
gagaaatccatcaatgctgccgggaacatcaccattgatggagtggaggttctgggacgc
atggtccgctcacgtggaagaagagataactcagcgccgtttcagctccagatgtttgac
atagtctgcagtacatcatgggccagtcgggataagtgctgtgagctcccaggcttgaga
gtagaagaggactgtcctgccatgccccacgcctgcacctgtgctcaggatagcaaagga
ccacctggaccctcaggaccaccgggcggtcctggtatcagaggttcaagaggagatcgt
ggggagccaggcttgacggggcctcaagggccacctggtgagatcggacctccaggacca
caggggccgccgggtcctcaggggccgaatggactgtccattcaggggccaccgggggct
tcaggagagaaaggagagaagggtgaaataggtctgccaggtcctcagggtgtaccgggt
gccagtggaggaccaggccgagatggacctccaggacaaagaggcctaccaggtaaagat
ggaccccagggacgacagggccccccaggaccaatgggaagccctggagcacctggggct
ccaggaccaagtggatctacagggcaagttggtgatcaggggccacctgggcctcccggt
gcaaagggcgaacgaggagagagaggtgacatgcagtctcaggccgctgtccgtgccata
gcgcgacaagtttgtgaacagctcattcagagtcacttgtctcgctacaactctattctc
aaccagattcccagtcagtctgtttcggtacgaacagtaccaggtccaccgggtgagcct
ggtcggcagggacctccggggcctcagggagagcagggtccttctggcagaccaggattc
cctggagccagtgggcaaaatggccgcccaggagagagaggtctcccaggagaaagggga
gaaaagggcagtccagggatagggacacaaggccctcgtggtcctccagggcccccaggg
cctcctggagaaggtcggacaggaagtcagggtcctccagggagacctggaattcagggc
tcctcagggcgtccaggtacccctggtagccctggtcctgctggaccccccggctactgc
gaccagaactcctgcatcgggtacaacgttggagatggcaaccgatctaattcccccatg
ttcccatag
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