Labeo rohita (rohu): 127178584
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Entry
127178584 CDS
T09007
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127178584 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lroh03021
]
127178584 (smarcc1a)
03036 Chromosome and associated proteins [BR:
lroh03036
]
127178584 (smarcc1a)
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127178584 (smarcc1a)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
127178584 (smarcc1a)
PBAF complex
127178584 (smarcc1a)
GBAF(ncBAF) complex
127178584 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
127178584
NCBI-ProteinID:
XP_050987503
LinkDB
All DBs
Position
16:8058403..8077570
Genome browser
AA seq
1101 aa
AA seq
DB search
MATAATAAGGTGSGGPSAGQAGAGSSIGRKKDGGPSSKFWESSETVSQLEAVRLWIGKHY
KKYVQTDSPTSKTLAALVVQLLQFQEDAFGRRVSNPALTKLPAKSFLDFKPGGALCHILG
SAYKFKSDQGWRRFDLQNPSRMDRNVEMFMTIEKTLVQNNSLTRPIVYIVSDMEQKQANK
LKDIIKRHQGTITEDKSKATHIIYPSPAQVEEEEWLRPVMRKDKQVLVHWGNYPDSYDTW
VSTSDVDGDVEDPPSSEKPWRVHAKWVIDTDAFNEWMNEEDYEVDENKKPVSFRQRIFPG
EEVSSRTPDRKDRKSLVAGKKRRRSPSPPSTPAESRKKGKKGNPGSQGRRRGHQNDDEQD
EDLTKDLEDPSPVPGMEEVTLPKNVNQKKDSENTPVKGGTVADLDDQEDDSLASGGKEED
EQGKTEVNRLIDSEDNVTEQTHHIIIPSYAAWFDYNSIHEIERRALPEFFNGKNKSKTPE
IYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLVNYQVDAESRP
LPMGPPPTPHFNVLADTPSGLVPLHHRPPQVPPAQQMLNFPEKGKDKPTDLQNFGLRTDI
YSKKNPKSKGAAGGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPI
EDQYLESSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVAAAAAKAALEEFSRVR
EEVPTELVEAHVKKVQEAARNTGKVDPAFGLESSGIAGTAPEEPEKTEPTETEKMDTDSD
SQPDKAESKDEAEKPSESAEKPTETEKEKNETTEKSEPQEEEESEGGESKTAEKDKEEDM
ETTEEGKEGEEEKEEGKKKLELDIGEGNIATAAAAALASAATKAKHLAAVEERKIKSLVA
LLVETQMKKLELKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQLKYAEMKARQQ
MEQQAAAQQNAGGHHGPPPHGPPPHGPPPGMHPGHPGHPGHPGPGYPPMHHPMGPHHAPQ
TGPMVGPGQPMPGQPMPGRMMPVPPPVGPPQGGMPPMMGPRHPGPPNGMYPGPPPTAQPD
GMPPGPVGPSVSAPPPRAAEN
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggcgactgcagcgggcggaacgggctccggaggaccatcggccggccaa
gcgggcgccggatcctcgatcggacggaaaaaagacggagggccttcttccaaattttgg
gagagctcggaaacggtgtcccagttggaggcagttcggctgtggatcgggaaacattat
aagaagtatgtccaaaccgactcacctacaagcaaaactttggctgcgctggtggtgcag
ttgctgcagtttcaggaggatgcatttggccgtagagtcagcaatcctgcccttaccaaa
ctacccgcaaagagctttctggatttcaaacctggaggagccctttgccacattctgggt
tcagcatacaagttcaaaagcgaccagggctggaggaggtttgatttgcagaacccatcc
agaatggatagaaatgtagagatgttcatgactattgagaagactcttgttcagaacaac
tctttgacccgaccaattgtgtacattgtgtctgacatggagcaaaagcaagcaaacaag
cttaaggacatcattaagagacatcagggaaccatcactgaagataagtcaaaggccact
catattatttacccctccccagcccaggtggaagaagaggaatggctacgtcccgtcatg
cgcaaagacaagcaagttttggtccactggggcaattaccctgacagctatgacacatgg
gtatcaacaagtgatgtggacggagatgttgaagatccaccaagttctgagaaaccatgg
agggtgcatgcaaaatgggtcatcgacacagatgctttcaacgagtggatgaatgaggaa
gattatgaagtggatgagaacaagaagcctgtgagtttccgccagcggatcttcccaggg
gaggaagtgtcttcccgtacacccgatcgcaaggaccgcaagtccctggttgccggcaag
aagaggagacgctctccatcccctcccagcacccctgcggagtcccgcaaaaagggcaag
aaagggaatcctggatcacaggggaggcgccgtggacatcaaaatgatgacgagcaggat
gaagacctcacaaaggacctggaagatccttcccctgtgccaggaatggaggaagttaca
ttgccaaaaaatgtcaatcagaaaaaggacagtgagaacacaccagtgaaaggtggaacg
gttgctgatttggatgaccaggaagatgattcactagcgtctggaggcaaggaggaggat
gaacagggcaaaacggaggtcaatcgtctgatcgattctgaggacaacgtgaccgaacaa
acccatcacatcattatacccagctatgctgcctggttcgactacaacagtatacatgaa
attgagaggcgcgccctgccagagttctttaatggcaaaaacaaatctaagactccagag
atctatctggcttatcgtaacttcatgattgacacataccggctgaatcctcaggagtac
ctgacctccacctcctgcaggagaaacctcactggagatgtgtgtgcggtcatgagagtg
catgcctttttggagcagtggggtctggtgaattaccaggttgatgctgagagcagaccc
cttcccatgggccctccaccaaccccacatttcaacgtcctggctgatactccctctggc
ttagtgccgcttcaccaccgccctccacaggttcctcctgctcagcaaatgctgaacttt
ccagaaaagggcaaagacaagccaactgacctgcagaactttggcctccgtacagatatt
tactcaaagaagaatcctaagagtaaaggggctgctggtggtagagagtggactgagcaa
gagacattgcttctgttggaggctctggagatgtataaggatgactggaataaggtttca
gagcatgtgggcagccgtacacaagatgagtgcattttgcactttttgcggctgcccata
gaggatcaatacctggagagctctgaagcctcgctaggccctctggcttaccagccgata
cccttcagccaatcaggaaatcccgtcatgagcactgttgcattccttgcctctgtggtt
gacccgcgtgtagcagcagctgctgctaaggcggctctagaagagttctcgcgtgtgcgt
gaggaggttcccaccgagctggtggaggctcatgtgaaaaaggtacaagaggccgcacgc
aacacaggaaaagtagaccctgcgtttggcctggagagcagtggcattgccggtacagcc
cctgaggaaccagagaagacagaacctacagagactgagaagatggacactgactcagat
tcccagcctgataaggcggagtcaaaggatgaagcagagaagcccagcgagtctgcggaa
aagccaacagagacggagaaggaaaagaatgagactacagagaaatctgagccgcaggaa
gaggaagagagtgagggaggagaatccaaaacagcagagaaagataaagaggaggatatg
gagaccacagaagaaggaaaggagggtgaagaggagaaggaggaaggaaagaaaaagcta
gagttggatatcggagaggggaacatcgccacagctgccgctgctgccctggcctctgct
gccaccaaggcaaagcacctggctgcagtggaagagaggaagatcaaatctcttgtggct
ctgctggtagagactcagatgaagaagctggagctcaaactcagacactttgaggagctg
gaaaccatcatggaccgtgagaaagaagcactggagctccagaggcaacagcttttgaca
gagcgacaggcgttccacatggagcagttgaagtacgctgagatgaaggctcgtcagcag
atggagcagcaggcagctgcgcagcagaatgcaggaggacatcacggaccacctccacac
ggccctcctccgcacggcccacctccaggcatgcaccctggacacccaggacatcccggg
caccctggccccggatatcctcccatgcaccatcccatgggtccccaccatgcccctcaa
acaggaccaatggttggaccaggccagcccatgccaggtcagcctatgccaggccgaatg
atgcctgtacctcccccagttggacccccacagggtgggatgccgcccatgatgggacct
cgacaccctggaccacccaacggcatgtacccaggtccacctccaaccgcacagcctgat
gggatgccccctggcccagtgggaccttctgtatctgcgccccctcctcgtgctgctgaa
aactaa
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