Labeo rohita (rohu): 127178622
Help
Entry
127178622 CDS
T09007
Name
(RefSeq) glutamate receptor ionotropic, NMDA 2D
KO
K05212
glutamate receptor ionotropic, NMDA 2D
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04020
Calcium signaling pathway
lroh04080
Neuroactive ligand-receptor interaction
lroh04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
127178622
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
127178622
04082 Neuroactive ligand signaling
127178622
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lroh04040
]
127178622
Ion channels [BR:
lroh04040
]
Ligand-gated channels
Glutamate (ionotropic)
127178622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
ANF_receptor
Med7
Motif
Other DBs
NCBI-GeneID:
127178622
NCBI-ProteinID:
XP_050987555
LinkDB
All DBs
Position
16:complement(23446254..23554976)
Genome browser
AA seq
1961 aa
AA seq
DB search
MVTVPTLSLLLALVEWAGQTSSSPHLLLRPRERERDPVASMHFNIAVIHAGSTVQQGEAG
AAAAAGRVPYPGFGRVHSSFGESVVTQWGSANVIWLQVNDSSPRTLLSQLCDLLAARPLQ
GLVYEDERALPLASGPLAPMLEFVSAQTGLPIVAVGGGAGLGRVPQETGSIFLQFSSSTA
LQLEVIFEVLEEYDWTAFSVVSTRHHGYQDFLSVVEGLTDGSFIGWEKKSVVMLNLTDDP
GGARTRRLLKENEAQVRLLYCSQEEAEQVFHAAWAAGQAGASHIWFAVGPALSELGLTGL
PNRLFAVRPQGWRDEPRRRIARGVSILTHGAVALRKDYGATGGPHFVTNCQTDGNRTQRI
RGRMKYFSNITLGGRDYSFNNEGYLANPFLDVISYTPGSGWEDVGWWENGVLRLRYPAWS
RYGPFLQPPDDAQHLRVVTLEERPFVIVELADAASGTCIRDSVPCRRPLNASALQEGVAP
MKQCCKGFCIDILKRLAKIVGFTYDLYLVTNGKHGKKIDGVWNGMVGEVVYKRADMAIGS
LTINEERSEVVDFSVPFVETGISVMVSRSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAV
TVFIFEFFSPVGYNRSLQSGKKAGGSKFTIGKSIWLLWALVFNNSVPVENPKGTTSKIMV
LVWAFFAVIFLASYTANLAAFMIQEEYIDTVSGLSDKKFQHPTEQYPPLKFGTVPNGSTE
KNIRSNYPDMHQYMIKYNQKSVEDAISHLKTGKLDAFIYDAAVLNYMARKDEGCKVMTIG
SGKVFATTGYGIALIKNSRWKRPLDLALLQLVGDDEIEMLERLWLSGICHNDKIEVMSSK
LDIDNMAGVFYMLLVAMGLSLLVFAWEHLVYWRLRHCMSKMGQSGKLDFLLAFSRGMYSC
CSFEDETAQGGAKVTVPGHHHTAMVPASSSHVVTSAVSTPAIAMVQQQQQQQPQQPQPPQ
SYKTPLPGSPPTIVHSGAALGPANTQLVGAPLPCTTFLPRPDRRLAVVDRWRLPKTASAT
TAMGVRGPLAETGPLTQKVAPTWAGGGGAGSGLDGYKRYYGPIDPEGLGPCVDQQTGSQT
PKTVPRAHQQPPPTSVAFYQEKGMDHGMGKKVGVGTGGGGQGRGVKPLGTPRLPPKSQAP
APLTPNPPLQHPSPPLPSSFWRKRRPKKPKEPGGPLYENILPLGRRGGGREASRRPRPSP
PLPIPVPVTLSPSYTPPSPSPSLPYTSTSTSSSTTSSSTTSSATSSRSTSPSSTSTASSR
STRDREAEEEDEEDLDELTEESSLLQGHNRTRDRERSILSPRSLTHGPPPPIPPRKPWGT
FGDREHKKDRERERGGSQLAQLQEWWAGWAERERDRERSGGAQGDTERKREKKRRKEREK
EKKKKKKKNKKRKKREERERERERERKRRKVKKKKKKALKTKKKKKVSSGKRSEPEEGDV
EAERDGEGDGDREGEYSSFSTQYRSAFADKGSLSAWEGERERGRRDGGEDDGDEREDDSG
GGRGRERRPKSSHSRHRPSSKRYPNLNKLPSSVKFWVSGGEAGGTEASGPSPPSSLHTLL
SSSKRRRSSGVEREEEGRVGERRPLLLHYERGRVNTREGLSFHEWDSEDEEEGGEEEERE
RERERERIEERVRRAGRGAVSESERDRIRAEESFSDEGSSGEFGRFERYWEGTGAGGASG
IGGGGWFFGTYPAREKGGSVNSRDDSILGRGEGWGMAGDFWGSGPGIGWGSGGGSGGLGS
QWPPPPTSLPPPRRYWSVDKLQMKSEKRSRSGSKSKGQRSRDRMQDAASCTCTQYGHGRP
HVHHKHSSTQSHSQEDLLPHCHSFSGSSRPKPPPKPDKSKSGSQSNLSSQQAQLSEHIPQ
PSPSPPQPLLPSLPVPSAPNSLPMPIPPPPSSASMSPPPVLSPGAASGSSQAATASAKLQ
YQRLRSVPQPRRFYSPHLPLKAKSLCSRRGSAHFSSLESEV
NT seq
5886 nt
NT seq
+upstream
nt +downstream
nt
atggtcacagtacccacactctctctgctattggccctggtagaatgggcgggtcagaca
agctcctcccctcatctcttgctccggccccgagagcgtgaacgagacccggtggcatca
atgcacttcaacatcgcagtgatccacgcgggctcaacggttcaacaaggggaagcaggg
gctgcagcagctgcgggtagggtgccttacccgggcttcggacgtgtgcacagcagcttt
ggtgagagcgtcgtcacccagtggggatccgcaaacgtaatctggctccaggtgaatgac
agcagccccaggacgctgctctctcagctgtgtgacttgctggcagccagaccccttcag
ggactcgtgtatgaagatgagagagccctcccgctggcctccggccccctggcccccatg
ctcgagttcgtttcggcccagaccggcctccccatcgttgctgtgggagggggagcgggt
ctgggcagggtaccacaggagaccggctcaatcttcctgcagttcagctcttccaccgca
ctccaattggaggtgatctttgaggtgctggaggagtacgattggacggccttctcggtg
gtgtccacacgtcaccatggctaccaggacttcctgtcagtcgtggaaggtttgaccgac
gggtcattcatcggctgggagaagaagagcgtagtgatgttgaatttaaccgacgacccg
ggaggagcgcgcacacggcggctactgaaagagaacgaagcgcaggtgcgtttgttgtac
tgctctcaggaggaggcagaacaggtgttccacgctgcttgggcagctggtcaggccggc
gcctctcacatatggttcgcggttggtccggctctgtccgagctgggcctgaccggacta
cccaatcggctgtttgcggtcaggccgcagggctggagggatgagccccgcagacgcatt
gcccgtggggtgtccattcttacccacggagctgtcgcgttgcgtaaggactacggagcc
actggaggaccgcactttgtcactaactgtcagacggatggcaacagaacacagaggatt
cgcggcagaatgaagtatttcagtaacatcaccctcggtgggcgggactattccttcaat
aacgagggctacctggccaatccctttctggatgtcatctcctacacgcctgggagtggc
tgggaagacgtaggatggtgggagaacggggtgttacgtctgaggtaccctgcttggtct
cgctacggccctttcctgcagccgcccgatgatgctcagcacctgagggttgtgaccctg
gaagagcggccctttgttatcgtggagcttgcagacgctgcctctggaacctgcattagg
gactccgtgccatgcagacggcctctcaatgccagtgcacttcaggaaggggtggcaccc
atgaagcagtgctgcaaaggattctgcatcgacatcctcaaacgattggccaaaattgtc
ggcttcacctatgacctctacttggtgaccaatgggaaacatgggaagaagattgacgga
gtttggaacgggatggtgggagaggtcgtgtacaagcgggcagacatggcgatcggctct
ctcactatcaacgaggagaggtcagaggtcgtggacttctctgtgcccttcgtggagacg
ggtatcagcgtcatggtctctcgcagtaacgggaccgtctctccctctgcttttctcgag
ccgtacagccctgctgtgtgggtgatgatgtttgtaatgtgcctgaccgtggtggcagtg
acggttttcatcttcgagttctttagtccagtggggtacaaccgcagccttcagagtggc
aagaaggccggaggttccaagttcacaataggcaagtcaatctggcttctttgggctctg
gtctttaataactctgttccagtggagaaccccaaaggaaccactagcaagatcatggtt
cttgtctgggctttctttgctgtcatcttcctggctagctacactgccaacctggctgcc
ttcatgatccaagaggaatacattgacactgtgtctggcctcagtgataaaaagtttcag
caccccacagagcagtacccccctctgaaatttggaacggtccctaacggaagcacagag
aaaaacatccgcagtaactatccagacatgcaccagtacatgatcaaatacaaccagaaa
agtgtggaggatgccatctcccacctcaagactggtaagctggatgccttcatctacgat
gcggccgtattaaactacatggctcgtaaagatgaaggctgtaaagtaatgaccatcggc
tcagggaaagtattcgccacgactggttacggcatcgccctgatcaagaactcccgctgg
aaacggccgttggacttggccttattgcagctggtgggcgacgatgagattgaaatgcta
gagcgtctctggctctcagggatctgtcataatgataaaattgaggtgatgagctccaaa
ctagacatagacaacatggctggtgtgttctacatgctgctggttgccatgggcctaagt
ctgctggtcttcgcctgggagcacctggtgtactggaggctgcggcactgcatgagcaaa
atgggccagtctggcaaactggacttcctactcgccttcagcaggggaatgtatagctgc
tgcagttttgaagatgaaactgcacaaggtggggctaaagtcacagttcctggccaccat
cacactgccatggttcctgcttcttcctcacatgtggtcacttcagctgtatccactcca
gccattgccatggtgcagcaacagcagcagcaacaaccacaacagcctcaacctcctcag
tcttacaaaacacctcttcctggatcccctcccacaattgttcattctggagcggccttg
ggtcccgcaaatactcaacttgtaggagctccactaccatgcactactttcttaccccgg
ccagatcgcaggttggcggttgtggaccgttggagactacccaaaaccgctagtgccacg
accgccatgggtgtgagaggacccctagcagaaacaggacccctaacccaaaaggttgca
cctacctgggcaggtggtggaggtgcaggtagtggtctagatggatataagcgctactat
ggacctattgatccagagggacttgggccatgtgtggaccaacagacaggctctcaaact
ccaaaaacagtccctagggcacaccaacaacccccgccaactagtgtggctttctaccag
gagaagggcatggaccatggcatggggaagaaggtgggagtgggtactggtggagggggt
cagggtagaggggttaaacctctggggactcccaggcttcctcctaaaagccaggcccca
gccccgctgacacctaaccccccgctgcagcacccctctccccctctcccttcatccttc
tggaggaaacggcgaccaaaaaagcccaaagaacctggtggcccattgtacgagaacatc
ctgccactgggccggagaggtggaggcagggaagcgagtcgaagaccgagaccctctcct
cctctccccatccctgtgccagtcacactttccccatcctacactcctccgtccccctct
ccctcactcccctacacctccacatcaacctcctcatccaccaccagctcatcaaccaca
tcttcagccacatcctcacgctccacctctccttcatccacctccacagcttcatctcgc
agcacccgagacagagaggctgaggaagaggatgaggaggatttggatgagctgaccgaa
gagtctagtcttctgcagggccacaacagaaccagggatagagagcggtccatactttcc
cctagatctctcactcatggacctccccctcctatacccccacgcaaaccatggggcacc
tttggagacagggagcataagaaagacagagagagagaaaggggtggcagtcaactagca
cagctccaggaatggtgggcgggatgggcagagagagagagggacagggagagaagtggt
ggagcccagggagatacagagaggaaaagagagaagaaacgtaggaaagaaagggaaaag
gaaaaaaagaaaaagaagaagaaaaacaaaaaacgaaaaaagagggaagagcgtgaaaga
gaaagggaaagagagaggaagcgtcgcaaggtgaaaaagaagaaaaagaaggcactgaaa
accaaaaagaagaagaaggtgtcatcaggcaagcgttcagagccagaggagggtgatgtt
gaggcggagagagatggagagggggatggggacagagagggagagtactcgtcattttcc
actcagtatcgcagtgcatttgcggacaaaggcagcctttcagcttgggagggagagaga
gaaagaggaaggagagatggaggtgaggacgatggggacgaacgagaggatgatagtggg
ggaggtagaggtagagaaagaagacccaaaagctcccattcacgacaccgaccgtccagt
aaacggtatcccaacctcaacaaactcccctcttcagttaaattctgggtcagtggaggc
gaagcaggtggcacggaggcctccggaccctcccctccctcctctttgcatacactcctc
tcctcgtccaagaggcggaggagtagtggggtagagagagaggaagaagggagagtagga
gaacgcaggccactgcttctccactacgaaagggggcgagttaacacaagagaaggcctg
tccttccatgagtgggactctgaggatgaagaggagggaggggaagaagaggagagagag
agagaacgagaaagggagagaatagaggagagagtgcggcgggcaggaagaggagcagtg
tcagagtcagagcgggataggataagagcagaggaaagcttttccgatgaggggtcctca
ggagagtttggccgttttgagagatattgggaaggaactggagccggcggagctagtgga
attgggggtgggggctggttttttggaacataccctgctcgagagaaaggtggaagtgtc
aacagtagagatgactctattttgggtcggggtgagggatggggtatggcaggtgatttc
tggggttcgggtccagggattggatggggatctggaggaggcagtggggggctgggttca
cagtggccaccccctcccacttccctgccaccaccacgacgctactggtcagtcgacaaa
cttcagatgaagagtgagaagcgtagccgcagtgggtcaaagagcaaaggtcagaggtct
cgggatagaatgcaagatgcagcatcatgtacatgcacacagtacgggcacggtaggccc
cacgtacatcacaaacacagcagcactcagtctcacagccaagaggatctgcttccccac
tgccacagcttcagtggaagctctcggcccaaaccaccccctaaacctgacaaatccaaa
tccggaagccagtccaacctaagctcccagcaagcccagctctcagaacacataccccag
ccatcaccctccccacctcagccactcctgccctcattacctgtaccttctgctccaaac
tccctacccatgcccattcctccacctccatcctccgcatccatgtcccctccacctgtg
ctctctcccggggctgcttccggctcctcccaggcagccaccgccagtgctaagcttcag
taccagagacttcggtctgtgccccagccaaggcgattctactccccacacctgccactc
aaagccaagagcttgtgctcacgtcgcggttctgcccatttctccagcctagaaagtgaa
gtatga
DBGET
integrated database retrieval system
