Labeo rohita (rohu): 127178640
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Entry
127178640 CDS
T09007
Symbol
smg5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127178640 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127178640 (smg5)
03032 DNA replication proteins [BR:
lroh03032
]
127178640 (smg5)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
127178640 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
127178640 (smg5)
DNA replication proteins [BR:
lroh03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
127178640 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Spt20_SEP
DUF1515
Motif
Other DBs
NCBI-GeneID:
127178640
NCBI-ProteinID:
XP_050987583
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All DBs
Position
16:complement(5913522..5934409)
Genome browser
AA seq
1100 aa
AA seq
DB search
MSGPGQDSEPEAKVLHIKRLYRAVVETVHKLDIIISGKSSYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFFQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKPVSATPKEMEWAQMACHRCLVYLGDLAR
YQNELAGVEAEQLAERFYHQALSVAPHVGMPFNQLGTLAGSKFYNVEATYYYLRCIQSET
PFDGAYGNLKRLFDKAAKMYHQVKKQEMKKLSPSRQRSKDIKRLLVSFMYLQSLLQPKNS
LMETELTSLCQSVLEDFNLVLFYLPLPAHGSQSASEEEEEHDSVFSVLPDSLIFKMVVTC
LMVVHSLKRGASKQYSASIAFTLALFSHLVNHVNIRLQAELEEGESDVPPLRTDNTDDAD
ARDHGSAALSEERTLQNGSLEEDDEEEEEKENEEDEPKGNGRTPGTKKSLEKKRSAEEKQ
KQKRKFSRLSMLRRRRCAHKEDESDLSEGFESDEEEDEESVVPVDSLGAPRVPMNSLGRE
GRRGPLPEAGSWESGSEEDEGGTAFDVETDSDMNSQESRSDLEDMEDAENAPQQPQQQQQ
QQQEEDEQPQPSREENSTPPVTNGPLVSNDASISSNLQAMSSQLFQAKRCFRLAPTFSNV
LLRPAATTNPTPDSNPAPVQEVTPPTGEIPRNKSPEIANGTNDNDPDSDSEGSVHSNHTF
HSEKTLSERLEILTNQGLIQVVKVFLDWLRTNTDIILMCAQSSQSLWNRLSVLLNLLPEG
SKMLETDLGLNKDVTELLNECEQPGLVQTLLLPEDLALRHLPALSVAHRRLDFTSQRPPL
TPLDECVVRVCCIRSFGHFLTNLQGNVLHFNPEAGIFTSISQSEQDNLVQQAKAQFRMAE
EEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSSMSPYLVPDTAVLCQHLGLLRQLAA
SGCFIIIIPRTVIDGLDLLKKENSGARDGIRFLETEFRKGNRYIRCQKESGRSFERDKLK
RQDIEAWHLYKMVDSCRQLTGSQSSGDEDTAGMVTILTGHSLEELSERSASMKAAVQAVA
AAGMELKNITDFYRQWKEMG
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtggaccggggcaagacagcgagccagaggccaaagtgcttcatattaaacgcctg
tacagagctgtggtggaaacggtgcataagttggatattataatcagcggcaagtcgtca
tatagggaggtctttaaacctgagaatatcagtttgaggaacaaattgcgggaactttgt
gtaaagctgatgttcctgcaccctgtggactatggacgcaaggctgaagagctgctgtgg
aggaaggtctactatgaggtcattcaggtcatcaagaccaacaagaagcatattcacagc
cgcagtgctttggagtgcgcctacaggacccatctgatcgctggggtgggcttttttcaa
cacctgctgctctacatccagtcacactatcagctggagttacaggactgcatcgactgg
acacacgtcactgacccactcattggtcgtaagaaaccagtctcagccacccctaaagag
atggagtgggcccagatggcgtgtcacagatgccttgtgtacttgggagatctcgcacgg
taccagaatgagctggcgggagtggaggcagagcagctggcggagcgcttttatcaccag
gccctgtctgtcgcaccccacgtcggcatgccgtttaatcagctgggtacgcttgctgga
agtaaattttataacgtggaggctacttactactacttgcgctgtattcagtcagagact
cccttcgatggcgcttatgggaatttaaagcgtctgtttgacaaggcggccaagatgtac
caccaggtgaagaaacaagagatgaaaaaactttcaccatcacgccagaggtcaaaagat
atcaaaagactgctggtgagcttcatgtatttgcagagcctgctgcagcccaagaacagt
ctgatggagacggagctgacgtcgctgtgccagtctgtgctggaagacttcaacctggta
ctgttctacctcccccttcctgctcacggcagccagtcagccagcgaggaggaggaagag
cacgactcggtcttttctgtgcttcctgacagcctcatattcaagatggtggtgacttgc
cttatggtggtgcacagtttgaagagaggtgcttcaaagcagtacagtgcctccatcgct
ttcacgttggctctgttctcccatttggtcaatcatgtcaacattcgactgcaagctgaa
ctggaggagggagagagtgatgtcccacccctgcgtactgataacacagacgacgctgat
gccagagatcatggtagtgctgctctctcagaggagagaaccctgcagaacggctcctta
gaggaagacgatgaagaggaggaggagaaggagaatgaggaagatgagcctaaggggaac
ggcaggacaccggggacaaagaagagcctggagaagaaaagatcagctgaggagaagcaa
aaacaaaagcggaagttctcacggctctccatgcttcgccgcagacgctgcgctcacaag
gaggacgagagcgacttgagcgagggattcgagagtgacgaagaagaggatgaggaaagc
gtcgttccggtcgacagtctgggagcccctagggtcccaatgaactctttaggaagggaa
ggccggaggggaccgctgccagaggctggcagctgggaaagcggttcggaggaggatgag
ggaggcacggcttttgacgtcgagacggactccgacatgaacagtcaggaatctcgctcg
gaccttgaagacatggaggatgctgagaatgcgccacagcaaccgcagcagcagcagcag
cagcaacaagaggaagatgagcaaccacaaccgtctagagaggaaaactctacacctcca
gtaaccaatggccccttagtgtctaatgacgccagcatcagcagtaacctgcaggccatg
tcctctcagctcttccaagccaaacgctgctttcgacttgcccccacctttagcaatgtg
ctgctccgccctgcagctaccactaaccccaccccagactcaaaccctgccccagtccaa
gaagtcacacctcctactggagaaataccaagaaacaagagtccagagattgctaatgga
accaatgacaatgatcctgactctgattctgagggcagtgtgcacagcaaccatacgttt
cacagtgaaaaaaccctttctgagcgattagagattctgaccaatcagggtctcatccag
gtggtaaaggtcttcttggattggctgaggacgaacactgatatcatcctcatgtgtgct
cagagttctcagagcttgtggaatagactctcagtgctgcttaatttgcttcctgagggc
agcaagatgttggaaacagatttaggtctgaataaggatgtcacagaactgctgaatgag
tgtgagcagcctgggttggtccagacgctgctgctaccagaggatctggccctacgccac
cttcctgccctcagcgtagcccatcgacgcttggacttcactagccagagacccccactt
acccctctagatgagtgtgtggtgcgcgtgtgctgcattcgcagctttggtcacttcctc
acaaatctccaaggcaacgtgttgcacttcaacccggaggcgggcatcttcaccagcatc
agccaatcagagcaggacaacctggttcagcaggccaaggcccagttccgcatggcggag
gaggaggcacgccgaaaccggctcatgagagatatggcccagctgcgcctacagttggag
gtctctcagctggagggcagtctgcagcagcccaaagcgcagtcctccatgtctccttat
ctggtgccagataccgcagttctctgccagcacctggggctgctcagacagctggctgcc
agtggctgcttcatcatcatcatccctcgcacagtgattgatggtctggatttgctaaag
aaagagaactctggagcgagggatggaatcagattccttgagacagagtttcggaagggg
aacaggtacatccgctgccagaaagagtcaggaaggagctttgagagggacaaattaaag
cgacaggacattgaagcctggcacctgtataagatggtagacagctgtcgccagctgacg
ggatctcagagcagtggagatgaagacaccgctggcatggtgaccattctgacaggacac
tcattggaggaactgagtgaaagatcagcttccatgaaggcggctgtccaggcggtggca
gcagcaggcatggagctgaagaacatcactgacttctaccggcagtggaaagagatgggc
tga
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