Labeo rohita (rohu): 127178658
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Entry
127178658 CDS
T09007
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127178658 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127178658 (cnot3a)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127178658 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127178658 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4407
Motif
Other DBs
NCBI-GeneID:
127178658
NCBI-ProteinID:
XP_050987622
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All DBs
Position
16:14420110..14432007
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AA seq
893 aa
AA seq
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MADKRKLQGEIDRCLKKVAEGVEQFEDIWKKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
KEETEQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRLIERHRYHI
RMLETILRMLDNDSIQVEAIHKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEDIPATLMA
TSPQGHIEDEMFLQSSSTPTSTTSSSPIPPSPATGTMEISEDKRGRSTDSEVSQSPVKNG
NPSLSSFSSSASSGSSSSSSSLVSMATVVGGCTSVSGGSSLLGSFSSAVQQHAPQSQQQA
QVKLSSTSIPSNNTPSPPSHPTLPASTTSSLPSSSTPGPVTSNSQSQASSVPGIEGSRLG
LGLGKGGVTVTSSSSGAQMPGLGMAGLSGSLNSMAGLLSGSTPAPYAQAAAGGTAGSASS
GPVGSGSGSSGISVPSGVAGGANTGATSNGTGTGTGMGLLGSSPGHGALTGGILNLVPGQ
TTLQGSAQIPVSHVGTAPGGGTGESGLGGNGSSSVASAGVGTNVAPARPPSGLKQNGATS
YSAVVADNTPDSSLSSASQSQNSHSSSSSSSTNQTLDNGPSLLSSITLPPSSPSPAFTDS
TPGGGSLLNGPHSYTLNTEVIKAPEPPSSLKAMAERAALGLTLDGEISSLHLPDRAPPGP
TTAPQPAVSEVNLPPSLGACPLGPTPLTKEQLYQQAMQEAAWTHMPHPSDSERIRQYLMR
NPCPTPPFHHQVPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQSWRFHT
KYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagagaaaactacaaggtgaaatagatcgatgtttgaaaaaagttgcagaa
ggcgtagaacagtttgaagacatttggaaaaagcttcacaatgcagccaatgccaaccag
aaggaaaaatatgaggctgatctcaaaaaagagattaaaaagctccagcggctacgagac
cagattaagacatgggtggcatccaatgagatcaaagacaaacggcagctagtggagaac
cggaagcttattgaaacgcaaatggagcgatttaaggtggttgaaagagaaaccaagaca
aaggcctactctaaagaggggctgggcttggctcagaaagtggacccagcacagaaagag
aaggaggaaacggaacagtggctcacgaacacaatagacactttgaacatgcaggtggac
cagtttgagagtgaagttgagtccctctctgttcaaacgcggaaaaagaaaggagacaag
gagaagcaggatcggattgaggagctaaagaggttaatcgaaagacaccggtaccacatt
cgtatgctagagaccatcttaaggatgttggataatgattcgatccaggttgaagctatc
cataagatcaaagatgatgtggaatattacattgactcttcgcaagacccagactttgaa
gagaacgagttcctctacgatgatctggacttggaggacataccggcaactttgatggcg
acatctcctcagggccatattgaagatgagatgttccttcaatccagcagcacaccgacc
tccaccacttcctcttcacctatccctccatctcctgctacaggcacaatggagatttcg
gaggataagagaggtcgatcgacagacagcgaagtcagtcagtctcctgtgaagaacggc
aacccatctctctcgtccttctcctcatccgcctcctcgggctcctcctcctcctcctct
tcgctggtttctatggctactgttgtcggtggctgcacatcggtctccgggggcagcagc
ctgctgggaagctttagcagcgcagtgcagcagcatgctcctcagtcccaacagcaagca
caggtcaaactctcctcgacatccataccctccaacaacacacctagtccgcctagccac
cccacgttacctgcctccactacttcctctctacctagttccagcacacccggcccagtt
acttccaattcccagtcccaggcttcatctgttcctgggattgagggctctagactgggt
ttgggtctggggaaagggggcgtgacggtgaccagcagcagtagtggggctcagatgcca
ggtctgggcatggcaggcttgtctggttctctcaacagcatggcagggcttctctcaggc
tctacccctgccccctacgcccaggcggctgcaggcggaacagcaggtagtgcctccagt
ggtccggtagggagtggcagtggtagttcaggcatatctgtaccgagcggagttgcagga
ggagcaaacacaggcgcgaccagtaatggtacgggtacagggactggtatgggcctgcta
gggtcgagtccgggtcacggggccctaaccggaggaattctaaatctggtaccggggcag
acgactctccaggggtctgcacagatacctgtgagccatgtgggcacagcacctggagga
ggaactggagagagcggattgggtggaaatggaagcagttctgtggcgagtgcaggagtc
gggacgaacgtagcgcctgcaagacccccaagcggcctcaaacaaaatggagcaaccagt
tacagtgctgtggttgcggacaacacaccagactcctcgctcagcagtgccagccaatca
caaaacagccattcctcatcctcaagctcatcaaccaatcaaactctggataatggcccc
agtttattgagttctatcactctacccccctcctccccatcacctgctttcactgacagc
acacctggtggtgggagtttgctaaacggcccacactcctacacactcaacacagaagtc
atcaaggctcctgaaccaccaagctctctcaaagctatggcagaacgggccgcactggga
ttgacactggatggagagatttcatcactacacctcccagatcgagccccacctggaccc
acaacggctcctcagcctgctgtttcagaggtcaacctgccgccatctttaggggcatgt
ccgttaggccccacccctctcactaaagagcagctttaccaacaggcaatgcaggaggca
gcatggacacacatgcctcacccgtccgattcggagagaatcaggcaatacctgatgaga
aacccctgtcctacaccgccattccaccaccaggtgcccccacatcattcggactctatt
gagttctaccagagattgtccactgaaacgctcttcttcattttctactacctggagggc
acaaaggcgcagtacctgtcagctaaagcactgaagaagcaatcgtggaggttccacacc
aaatacatgatgtggttccaacgacacgaggaacccaagaccatcactgatgagtttgaa
cagggcacgtacatttactttgactatgaaaagtggggccagagaaaaaaggaaggattt
acgttcgagtacagatacctggaggacagagacctgcagtga
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