Labeo rohita (rohu): 127178676
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Entry
127178676 CDS
T09007
Symbol
smarcd3a
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127178676 (smarcd3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lroh03021
]
127178676 (smarcd3a)
03036 Chromosome and associated proteins [BR:
lroh03036
]
127178676 (smarcd3a)
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127178676 (smarcd3a)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
127178676 (smarcd3a)
PBAF complex
127178676 (smarcd3a)
GBAF(ncBAF) complex
127178676 (smarcd3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
127178676
NCBI-ProteinID:
XP_050987655
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All DBs
Position
2:complement(22127794..22153177)
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AA seq
515 aa
AA seq
DB search
MDMEDSAGGARKATKSKLFEFLVHGVRPGMTSGARMPHQGAPMGPPGPPYGGTPPIRPGM
PNPALDPNRKRPAPTQPVQPPPVQNRPRKKPLGFPAANEISARQMDMRDAQSDPSIGSFN
AKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKL
RLYISNTFNPAKPDAEDSEGSIASWELRVEGKLLDDPGKQKRKFSSFFKSLVIELDKDLY
GPDNHLVEWHRTPTTQETDGFQVKRPGDVNVRCTLLLMLDYQPPQFKLDPRLARLLGIHT
QTRSCIIQALWQYVKTNKLQDSHEKEYINCDKYFQQIFDCPRLKFCEIPQRLTNLLLPPD
PIVINHVISDKITAMARGVDPNDQKKTACYDIDVEVDDPLKSQMNGFLLSTANQQEIASL
DNKIHETIESINQLKIQRDFMLSFSRDPKGYIQDWICSQNRDLKLMTDTVGNPEEERRAE
FYNQPWSQEAVSRYFYCKIQQRRQELEQALAMRTT
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggacatggaggattctgccggaggagctcgtaaagccaccaagagtaaactgtttgag
tttctcgtccatggagtgcgtccagggatgacctcaggggcacggatgccccatcaaggc
gctcccatggggcctcctggacctccatacggaggaacgccaccgattcggccagggatg
cctaacccagctctagaccctaaccgaaaacgtcctgccccaacccagccagtgcaaccc
ccccccgtccagaaccgtcctagaaagaaaccacttggatttccagcagcaaatgagata
tctgcaagacagatggacatgagagacgcccagtcagatccttcaattggatccttcaat
gccaagagaagaaaaatggcagacaagattctccctcagaggatccgtgaactggtgcca
gagtcccaggcgtacatggacctcctggcttttgagcgcaaacttgaccaaaccattatg
aggaagagggtggatatacaagaagctctcaaaagaccaatgaagcaaaagcggaagcta
cgattgtacatttcaaacactttcaaccctgccaaacctgacgcagaggactctgagggc
agcattgcatcctgggagctacgtgtagagggcaagttattggatgatcctggaaaacaa
aagaggaagttttcgtctttctttaagagccttgttattgagctggataaggatctgtat
ggccctgacaaccacttagtggagtggcaccgcactccaacgactcaggagacagatggc
ttccaggtgaagaggcctggtgatgtgaatgtgcgctgtacactcttactcatgctggat
taccagcctcctcagtttaaattggatcctcgccttgcacgtctccttggcatccacact
caaacccgctcctgcatcatccaggctttatggcagtacgtcaagaccaacaagctgcag
gattctcatgaaaaggagtacattaactgtgataaatatttccagcagatttttgactgt
cctcgtctgaagttttgtgagatcccccagcgactaacaaacctgctactcccgcctgat
cctattgtgatcaatcatgttatcagtgacaaaataacagcaatggcacgaggtgtggat
ccaaatgaccagaagaagacagcctgctatgacattgatgttgaagttgatgatcctctt
aagagtcagatgaatggattcctgctgtccacagccaatcagcaagagattgcatcccta
gacaacaagattcacgaaactatcgagtccatcaaccaactgaagatccaaagagatttc
atgctcagcttctccagggatcccaagggctacatccaggactggatctgctcacagaac
cgggaccttaagctgatgacagatacagtgggaaatccagaggaagagagaagagcagag
ttttataaccagccctggtctcaagaagccgtcagccgctatttctattgcaagattcaa
caacgaagacaggagcttgaacaagctttggcaatgcgaaccacctaa
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