KEGG   Labeo rohita (rohu): 127178756
Entry
127178756         CDS       T09007                                 
Symbol
trip13
Name
(RefSeq) pachytene checkpoint protein 2 homolog
  KO
K22399  pachytene checkpoint protein 2
Organism
lroh  Labeo rohita (rohu)
Pathway
lroh04110  Cell cycle
Brite
KEGG Orthology (KO) [BR:lroh00001]
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    127178756 (trip13)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:lroh03036]
    127178756 (trip13)
Chromosome and associated proteins [BR:lroh03036]
 Eukaryotic type
  Centromeric chromatin formation proteins
   SAC (spindle assembly checkpoint) factors
    Others
     127178756 (trip13)
SSDB
Motif
Pfam: AAA_lid_TRIP13_C AAA TRIP13_N AAA_16 AAA_22 nSTAND3 AAA_25 AAA_18 Viral_helicase1 AAA_24 AAA_14 TsaE TIP49 NPHP3_N NACHT RNA_helicase bpMoxR ATPase_2 AAA_5 AAA_28 AAA_11 AAA_33 AAA_7 ATPase AAA_30 Cytidylate_kin RuvB_N DUF815 AAA_17 Zot ABC_tran SLFN-g3_helicase AAA_19 IstB_IS21 NTPase_1 NB-ARC Mg_chelatase nSTAND1 Sigma54_activat Rad17 PduV-EutP
Other DBs
NCBI-GeneID: 127178756
NCBI-ProteinID: XP_050987806
LinkDB
Position
16:complement(1917241..1928662)
AA seq 424 aa
MDISEHHMNDVGIIHPDVHIEVHVKSYSTANKSEVRTHVLSLLDRHSTILGTYRWTEFDD
EFLTKNVESVTVADLTGPKLVDLKVHNLCIHIFSLNDDCPSMLALEEEEELSAANHWLLP
AAEFHGIWESLIYEEGIKTQLLDYVSTTIFFSDRNVDSNLIAWNRVVLLHGPPGTGKTSL
CKGLAQKLSIRLSGRYVHSQFVEINSHSLFSKWFSESGKLVTKMFQKIQELIDDKDALVF
VLIDEVESLTAARSASQAGTEPSDAIRVVNSVLTQLDQIKRHSNVVILTTSNVTEKIDLA
FVDRADIKQYIGPPSASAIFNIYLSCLEELMKRQIIYPRQQLLSLEELGTMNFMESDVTH
LSLTLRNLAQRSVGLSGRALRKIPFLAHALYGKSSTMTVEVFLKAMERAVDKQRQEQASL
VNCV
NT seq 1275 nt   +upstreamnt  +downstreamnt
atggacatttctgagcatcacatgaatgatgttggcatcatccaccctgatgtgcacata
gaagttcatgtcaaatcttacagcacagccaacaagtctgaagtgaggacgcatgtgttg
tcactgctggatcgacacagcaccattttaggcacctacaggtggacggagtttgatgat
gaatttctaaccaaaaatgtggagtcagtcactgtagcagatttaactggcccaaaactt
gtggatctgaaggttcacaacctttgtattcatattttctctctgaatgatgattgtccg
agcatgcttgctctggaagaggaggaggagctttctgctgccaatcattggctcctccca
gcagctgagtttcatggcatttgggaaagcttgatttatgaggaaggcatcaaaacacaa
ctcttggattacgtttcgacaacaattttcttctctgacagaaacgtagacagcaatttg
attgcctggaatcgtgtcgtgttacttcacgggccgcctggcacagggaagacgtctctg
tgtaaaggacttgcccagaaactctccatcagactgtctggcaggtacgtgcacagccag
ttcgtggagatcaacagccacagtctcttctccaagtggttttcagagagtggaaaactc
gtcacaaagatgtttcagaagattcaagagctcattgatgataaagacgccttggtgttc
gtcctgatagatgaggtggagagtctcacagccgcacggagcgcctctcaagcgggaact
gaaccgtccgacgctattagggtggtcaattcagtgctgacccagctcgaccagatcaaa
cggcactcaaatgttgtcatcctcactacatccaacgtcacagaaaagatcgatctggcc
tttgtggacagagctgatataaagcagtacatcggtcccccgagcgccagcgccatattc
aacatctatctgtcctgtttggaggaactcatgaagcgtcagatcatttaccccagacag
cagctgctgagtttggaggaacttggcaccatgaacttcatggagagcgacgtgacccat
ctgagcttaaccctgaggaacctcgcccagaggagtgtgggacttagcggaagagccttg
aggaaaatcccatttctggcacatgcgctctatggaaagtcctccacaatgacagtcgag
gtttttctaaaagcgatggagcgcgccgtggacaaacagaggcaggaacaggcgagtttg
gtcaactgtgtttga

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