Labeo rohita (rohu): 127178776
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Entry
127178776 CDS
T09007
Symbol
sntb1
Name
(RefSeq) beta-1-syntrophin
KO
K24064
beta-syntrophin
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
127178776 (sntb1)
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Gene cluster
GFIT
Motif
Pfam:
PH_17
PDZ
PH
PDZ_6
PDZ_2
Tricorn_PDZ
Motif
Other DBs
NCBI-GeneID:
127178776
NCBI-ProteinID:
XP_050987832
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Position
16:complement(24593393..24635500)
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AA seq
515 aa
AA seq
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MAVCGNRVQKSVYLEVLVRERWHAVLASLGDESLTLSCEESATDTSVNLNGITTNGSYDQ
PDPTNSPKAGVRTPFTDSQVPEAIANRKRCVKVIKQEVGGLGISIKGGKENKMPILISKI
FKGLAADQTQALYVGDAILSVNGINLRDATHDEAVQVLKKAGREVMLEVKYMREATPYVK
KGSPVSEIGWETPPPESPRLGSPHFDIPSPPSLSLQGDRRYIPLKMCYLTRSMTIPDPEN
RQIELHSSDAKHTIVMRHNDTASAQTWFTLMQTAITNLTSKVICELREHASRHGVAGSRE
IRHLGWLAEKTESERQCWKPVLVVLTEKDLLLFDSMPRMREHWLSPTHTYPLLATRLVHS
GPDKGSPQPGGELCFATRTGTRLGIEAHLFRAETCKDLSLWTRHIVTGCHAAAEMIKEVT
TSCMYQGQDCRLVIHYERGFSVIADGEDSSVAQPLFSYPFEKLKMSADDGVRILYLDFGG
NEGEIQLDLHSCPKPIVFILHSFLSAKIARLGLVA
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttgtggtaacagagtgcagaaaagtgtatatttggaggtgctcgttcgggag
cgatggcacgccgtcctggcgagtttaggcgacgagtcgctgacgctcagctgcgaggag
tccgcgacagacaccagcgttaacctgaacggcatcaccaccaacggctcctacgaccag
ccggaccccacgaacagtcccaaagccggagtaaggactccttttacagattcacaagtg
cccgaagcgattgcgaaccgcaaaagatgtgtcaaagtgatcaagcaggaggtcggtgga
ttagggataagcatcaaaggcgggaaggagaacaagatgcctattcttattagtaaaatt
ttcaaaggtctggctgcggatcagacccaagcgctatacgtcggggacgcgatactgtcc
gtgaacgggatcaatctgcgggacgccacgcacgacgaggcggtgcaggtgctgaagaaa
gcgggcagagaagttatgctggaagtgaagtacatgcgggaagcgacgccatatgtgaaa
aaagggtcaccggtgtctgagatcggctgggagacgccccctcctgagtcccctcgtctt
ggaagtcctcacttcgatatccccagcccaccctcactgtccttacagggcgaccgcaga
tacatccctctcaaaatgtgctacttaacccgaagtatgaccatcccagacccagaaaac
aggcagattgagctgcactcctctgatgccaagcacacaatagtcatgagacataatgac
acagcctctgcccagacctggttcactctcatgcaaaccgccatcacaaacctcaccagc
aaagtcatctgtgaactccgagagcatgcgagccgccacggcgtcgccgggagtcgagag
atccgacacctcggatggctagcggaaaagacggaaagcgaaagacagtgctggaagccg
gtacttgtggtgttgacagagaaggatctgctactgtttgacagtatgccacgcatgaga
gaacactggctcagcccaacacacacctaccctctgcttgccacacggctggtgcattct
ggtccagataagggttcaccacagcctggtggcgagttgtgttttgctacacggacagga
accagattgggtattgaagcccacctgttcagggcagagacctgcaaggacctgtcgctg
tggaccaggcacatagtcactggctgccacgcagctgctgagatgatcaaagaagtcact
accagttgtatgtatcagggtcaggactgtcggttggtaattcactatgagcgaggtttc
tctgtcatagcggatggagaggacagctctgtggcacagcctcttttcagttacccgttt
gaaaagctgaagatgtctgctgatgatggagtacggatcctctatttggattttggtggg
aacgagggtgaaattcaactggacttgcactcctgtcccaagcccattgtttttatcctc
cactccttcctatctgccaagattgcaagattaggattggtagcctga
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