Labeo rohita (rohu): 127178910
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Entry
127178910 CDS
T09007
Symbol
snx27b
Name
(RefSeq) sorting nexin-27b isoform X1
KO
K17936
sorting nexin-27
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127178910 (snx27b)
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lroh04990
]
127178910 (snx27b)
Membrane trafficking [BR:
lroh04131
]
Protein recycling
Others
Others
127178910 (snx27b)
Domain-containing proteins not elsewhere classified [BR:
lroh04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
127178910 (snx27b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PX
PDZ
RA
PDZ_6
RA_2
SNX17-27-31_F1_FERM
SNX17_FERM_C
VirE3
USP7_C2
PDZ_2
SNX17-31_F2_FERM
DarA_N
Sina_TRAF
Motif
Other DBs
NCBI-GeneID:
127178910
NCBI-ProteinID:
XP_050988046
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Position
16:complement(20119405..20153083)
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AA seq
569 aa
AA seq
DB search
MADVVEGDGTRSAGPSTLHSAARNGSGMSSGTGAGGLVATTVTSGPRLVRIVKSDSGYGF
NVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGISKGDRILEVNGVNVEGATHK
QVVDLIRAGEKELVLAVLSVPQPETDSLDPGDDGSSQSCYDYSDKQAVPISVPTYKHVEQ
NGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFAFPKLPGKWPFSLSEQQLDAR
RRGLEEYLEKVCSVRVIGESDIMQEFLSESDENYNGVSDVELRIAMPDKTTVTVRVRKNC
TTDQVYQAVVTKIGMDSITASYFALFEVINHSFARKLAPNEFPHKLYVQNYTSAVPGTCL
TLRKWLFTTEEEILLNDNELAINYCFHQALDDVKKGFIKVGEKSYQLQKLTEQRKMTMYL
SILRTCEGYNEITFPHCSCDSRRKGHVVTAISIRHFKLHACTEDGTLENQVIAFEWSEMQ
RWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEVEEEATDKD
NKNCSKDEYLPTVEAQKGWRHMNEEIISS
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgttgtcgaaggagacggcactcgctccgctggtccttccacgcttcactcg
gcggctcgcaacggctccggcatgagctcgggaacgggcgccggcggcctcgtcgcgacc
acggtcacctccgggcctcggctggtccgcatcgtcaagtcggactcgggctatggcttc
aatgtccgcgggcaagtaagcgaaggagggcaactgaggagcatcaacggcgaactttat
gccccgctgcagcacgtcagcgccgtgttaccgggcggcgcggcagaccgagccggaatc
tcaaagggcgaccgtattctggaagtaaatggggtgaatgtggaaggggccactcataag
caggtggtagatctcatccgagcaggagagaaagagttggtcttggccgtcctgtcggtt
cctcagccagagacggacagccttgatcccggggacgacggctcgtcgcagtcctgctat
gactacagcgacaagcaggccgtgcccatctccgtacccacctacaaacatgtagaacag
aacggagagaagtttgtagtctacaatgtgtacatggcaggcaggcagctgtgctcaaaa
cgttatcgggagtttgccatcttgcatcagaatctgaagagggaatttgccaactttgca
tttcctaagctgccggggaaatggcctttctccctgtctgagcaacagctagacgctcgc
aggcgagggctggaggaatacttggagaaagtgtgttctgttcgggtaatcggagagagc
gacatcatgcaggagtttttgtcggagtctgatgagaattataatggtgtttctgatgtg
gagctgaggatagccatgccagacaagactacagttactgtccgggtgcgaaagaattgc
acaacagaccaagtctaccaggctgttgtaacaaaaattgggatggacagcattactgca
agttattttgccctgtttgaagtcattaaccactcctttgcacgcaagctggctcctaat
gagtttccacataagctgtatgtgcagaactatacatctgccgtcccaggcacctgcctc
acgcttcgcaagtggctctttaccacagaagaagagattctgctcaacgataatgagctg
gccatcaactactgctttcatcaggctctggatgatgtgaaaaagggattcatcaaagtg
ggagagaaatcctaccagctccaaaagctcactgaacagaggaaaatgaccatgtattta
agtattctgaggacttgtgagggctacaatgagatcactttcccgcactgctcctgtgac
tcacgaaggaaaggtcacgtcgttacggcgataagcatccgccactttaaactccatgcg
tgcacagaggatggcactctagagaatcaggtgatagcttttgaatggtccgagatgcag
agatgggacacggacgaagagggaatggctttctgttttgagtatgcgcgaggggagaag
aaacctcgttgggtcaaaatcttcactccatatttcaactacatgcacgagtgcttcgag
agagtcttctgtgagctcaaatggagaaaagaggtcgaggaggaggccacagacaaggac
aataagaactgcagtaaagatgaatatcttccaactgttgaggcacagaagggatggagg
cacatgaacgaagagatcatctcctcttga
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