Labeo rohita (rohu): 127178976
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Entry
127178976 CDS
T09007
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lroh03000
]
127178976 (rc3h1b)
04121 Ubiquitin system [BR:
lroh04121
]
127178976 (rc3h1b)
Transcription factors [BR:
lroh03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
127178976 (rc3h1b)
Ubiquitin system [BR:
lroh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
127178976 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
zf-CCCH_UNK
Prok-RING_4
zf_CCCH_4
FYVE
NS3_helicase_C
DUF2570
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
127178976
NCBI-ProteinID:
XP_050988150
LinkDB
All DBs
Position
2:complement(6912939..6936854)
Genome browser
AA seq
1108 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAINTD
IEQLPVNSALLQLVGGQVPKQQPVALITCPEDTKHYDEARQCVEELALYLKPLSSARGVG
LSNAAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADTQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARVPCTPGLLPDEVVPLEPGRKGSAL
TNGGPLPQLIPRGTDHSTYDLLLKPKMDATSLSAPGSPPDSLDKSSLALTPHPVPHPRAD
HLPMPKQVPVVPRGAPQMYPQQQPELFYPEPARPPPSGSQYDVQYPTGNPYPYQPPQYVP
PRYIRNPPPPGESAVPPYSEPYPGYGPDRQYPSHHSGPPFSAHTYAPPSHYSRRHGHYPA
PPPPFAPPRDDLVRMSPVPLDVPPAAMPPPPGGAAGSLYHPQEASSRDRYPPDGYYHAGP
HPSQMRSHIGQDPYNRSQPSLDDLHRRRKELLVQLEERKVISPPPFAASPTLPTHPFPND
YPREYLEDGSKAFGSREPDYAGQYSPWSCDTIGSYIGSKDAKPKDVSSAVEMMNAEGKVL
REPPLDTQRRSAEAKDDDPIIPFGPLPTVSPFGAISRTSKTGYQTTGPVQAIASSQASGS
KHMTMTADYPYGNHSGWGGASYPQHQSINSQGHFSERLPVSAPDREQLKIELQQVNQQIS
QQTRGMEAASNSMLLQREACALASQPAAGVKWSSGGAVSSEQLSLELDHVELEIKKRTRE
IAMENQVAHEYKLKATENGQPDRKAQLEELSLALGEVSNGSSGMKPASSMGGSMLSLTNK
TSSLTLCSADQAASSSDLQKNGVVHSCS
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacagagtttttactgtgccccatatgcacccagacg
ttcgaggagactgtgcgccggcccatcagtctgggttgtggccacactgtttgcaagatg
tgcctcaacaagttgcaccgcaaggcttgtccttttgaccagacggccatcaacactgac
atcgaacagctgcccgtcaactcggccctgctacagctggtcgggggtcaggtgcccaaa
cagcaacctgtggcactcattacgtgtccagaggacaccaagcattatgatgaggcacgg
cagtgtgttgaggagctggccctctacctcaaacccctcagcagtgcacgaggagtgggg
ttgagtaatgctgctcagagcatgctgagccgccccatgcagaggaagctggtgactctg
gtgcactgtcagcttgtagaagaggaaggtcgggtcagggccatgcgagcggcccgttct
ctgggcgaaagaactgttactgagctcattctgcagcaccaaaacccccagcagctctcc
tccaacctgtgggctgctgtcagagccagaggctgccaattcctgggcccagccatgcag
gaggaggcactaaaactggtgctgctggccttggaagacggatctgctctttccaggaag
gttctggtcctctttgtggtccagagactggaaccaagatttcctcaggcctccaaaacc
agtattggacatgtagttcagctcctctaccgtgcctcctgctttaaggtgacaaagcgg
gatgaggattcatcactaatgcagttgaaagaggagttccgcacatatgaggcacttcgg
cgggaacatgattctcagattgttcaaatcgcaatggagggagggctccgcatcgccccc
gatcagtggtcttctctgctgtatggagaccagtctcacaagtcccacatgcagtccatc
attgataagttgcagaccccagcgtcgtttgctcagagtgtgcaggagctgaccatcgca
ctgcagaggacaggtgaccctgccaatctcaacaggctgagacctcacctagaactgctc
gctaacattgaccccagtccagatgctcctcctccaacctgggagcagctggagaaggga
ctggtggcggtaaagacggtagtgcacggcctggtggacttcattcagaatcacagcaag
aagggtgccgacacgcagcagccaccccagcacagcaaatacaagacgtacatgtgcaga
gacatgaagcagaaaggaggctgtcccagaggagctagctgcaccttcgcccattcacag
gaggagctggaaaagtatcgtaaaatgaacaaacgtcttgctgcacgagtgccttgcact
cctggcctgctgcctgatgaggtggtcccgctagagcctgggcgaaagggctctgccctt
accaacggaggccctcttccccagctcatccccagaggcacagaccattccacatatgac
ctcttactcaagcccaagatggatgccactagcctgagtgctcctgggtcgccacccgac
tctttggataaatctagcttggccctgacaccccaccctgtgcctcaccccagggcggat
cacttacccatgcccaagcaggtgccagtcgtgcccagaggtgcaccacagatgtatcca
caacagcagcccgagctcttctatccagagccagccagacctcctccctcaggatctcag
tatgatgttcagtacccgacaggcaacccctacccataccagcctccacagtatgtcccg
ccccgctacatccgtaatccgcctcccccgggcgagtctgcagtaccaccttactcagag
ccctacccaggttacggcccagatcgccaatatccgagccaccactctggcccccctttc
tcagcccacacatatgcaccgccctcccattatagtcgcagacacggacattatcctgca
cccccacctccatttgccccgcccagagacgacttggttaggatgagcccggttcctttg
gatgttcccccagccgctatgcctccacctccaggaggggctgcaggttctctgtaccac
ccccaggaagcatcatccagagacagatacccaccggacgggtactatcatgctggaccg
caccccagccaaatgaggtcccacataggacaggacccgtataatcgctctcagcccagt
ctggatgacttgcatcgcagacgcaaagagttgcttgtccagctagaggagagaaaagtc
atctctcctcccccctttgctgcttccccgactcttcctacacacccgttccccaacgac
taccctcgggagtatttggaggacggctctaaagcctttggaagtcgggagccggactat
gctgggcagtattccccctggtcatgtgacaccataggatcatacattggctccaaggat
gctaaaccaaaagatgtcagtagtgctgtggagatgatgaatgcggaggggaaagttctc
cgtgaacctccactggacacccagcggcgctctgcggaagccaaagacgacgatcccatc
attccctttggtcctctgcccacagtgtctccttttggtgccatttcacgtacctctaaa
acgggttaccagaccactgggcctgtacaggccatagcatcctcacaggcctcgggctcc
aaacacatgaccatgacagcagactatccgtatggaaaccacagtggatggggtggagcg
tcataccctcagcaccagagcatcaactctcagggacacttcagcgagcgtctgcccgtg
tctgcccctgaccgtgagcagctcaagattgagctccagcaagtcaaccaacagatcagt
cagcagacccgtggcatggaggctgccagtaactctatgctcctgcagagggaggcgtgt
gcgctggcatctcagcctgcggctggagtgaagtggtcttcaggtggcgcggtgtccagt
gagcagctcagcctggagcttgatcacgtagagctggagatcaaaaagagaacccgagaa
atcgccatggagaatcaggtggcccatgaatataagctgaaggccactgagaatgggcag
cctgaccgtaaagcccagttggaggaactctctttagcattgggtgaggtgtctaatgga
tccagtggcatgaagccagccagtagtatgggtggatctatgctctcgctgaccaataag
acgtcgtctctcaccctctgctctgctgaccaagcagcgagtagctcagaccttcaaaag
aatggtgttgttcactcttgctcttaa
DBGET
integrated database retrieval system
