Labeo rohita (rohu): 127179509
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Entry
127179509 CDS
T09007
Symbol
pnn
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03013
Nucleocytoplasmic transport
lroh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127179509 (pnn)
03015 mRNA surveillance pathway
127179509 (pnn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127179509 (pnn)
03041 Spliceosome [BR:
lroh03041
]
127179509 (pnn)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127179509 (pnn)
Spliceosome [BR:
lroh03041
]
Complex C
Other components
EJC/TREX
127179509 (pnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
127179509
NCBI-ProteinID:
XP_050989025
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All DBs
Position
17:7943004..7949794
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AA seq
670 aa
AA seq
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MAVAVRSLQDQLEKAKESLKSVDENIRKLTGRDPSELRPGQNRRLTIPGPGGGRGRGINL
LRRGLSDSGGGPPAKQRDIEGALLRLAGDQRARRDSRHDSDAEDDDDVKKPALQSSVVAT
SKERTRRDLIQDQTMDERGKQRNRRMFGLLMGTLQKFKQESTVSTERLKRRQEIEQKLEV
QAEQERKKVESERRELFEERRAKQTELRLLEHKVELAQLQEEWNAHNTKLIKFIRTKTKP
PIFYLPGRMCSATQKLLEESQKKLNGVFDERREAFAEQLNKMEARPRRQSQRTGDKETED
SRRAEETKKEDQEEGKAGVGRTGNRHDVEMEDEEEDIVEEEAEESLEIREREGDQEQEQG
EEKDKREESERKAEEEDEEEDEEEVGTSGDKEEGEEQMEVAEVVREDEAQGKLQVESPEA
TVEEVGNVQKEEEQETEVEAQQDVVTDSQQTPESQMEMQPEECKQPQQDVPTPSVTERDT
KQDDTASDTQQPQLEPDPEVPSKEQSQEPAVQLQEAKADTKEASEETDDARGRAKVRAKR
SKSRSSSSSSSSSSSSSSSSGSSSSSSGSSSRSSSSGSSSSSSSSRSRSRGRDRDGRDHK
RRRRPSDRERRKSGSERGHKSSKGSGRESKSSKDKNSKPDRKRTNSEGSRSGRRSSRNER
DRKSDRKERR
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggccgtgcgaagtttgcaagaccagctggaaaaagccaaggaaagcttaaaa
agcgtggacgaaaatattcgaaaactaaccggcagagacccgagcgaattaagaccgggt
caaaataggagattaaccatcccaggcccaggtggaggtagggggcgtggaatcaatttg
ctgaggcgtggactttcagatagtggtggaggacccccagccaaacagagagacatcgaa
ggggcactcttgaggctggcaggggatcagcgagccaggagagattcacgccatgacagc
gacgctgaggatgatgacgatgtcaaaaaaccagcgttgcagtcatctgtggttgctacc
tccaaagaacgtacgcgccgagatcttattcaagatcagactatggacgagagaggaaag
cagaggaaccggcgtatgtttggcctgttgatgggaacattgcagaaatttaaacaagag
tctactgtgtccacagagcggttaaagagacgccaagaaattgagcagaaattggaagtg
caggcagaacaggagcgtaaaaaagttgagagtgaaaggagagagctctttgaagaaaga
cgtgcaaaacaaacagagctgcgtcttctggagcacaaagtggagctcgctcaactgcaa
gaagagtggaatgcacataatactaagctcatcaagtttattcgcacaaagaccaagccc
ccaatcttctacctgcccggtcgaatgtgctccgctactcaaaagctcctggaagagtct
cagaaaaaattaaatggtgtgtttgatgagagacgtgaagcctttgcagagcaactcaac
aaaatggaggctcggccaaggcgtcagtcccagaggacaggtgacaaagaaacggaggat
agccgtcgggctgaagagacgaagaaagaagatcaagaggagggtaaggctggagtaggg
cggacaggtaacaggcatgatgtggagatggaggacgaagaggaagatatagttgaggag
gaagcagaggagagcttagagattagggagagggagggggatcaagagcaggagcagggt
gaggagaaggataaacgtgaggagagtgagaggaaggcagaggaggaagatgaggaggag
gacgaggaggaagtaggaacaagtggggataaggaagaaggggaagagcagatggaggtt
gcagaagttgtaagggaggatgaggcacagggtaagctgcaggttgagagtccagaagcc
acagttgaagaggtaggtaatgtgcaaaaggaggaagagcaggagacagaggtcgaggct
cagcaggacgttgtaacagactctcagcaaactcccgagagccagatggaaatgcagcct
gaggagtgtaaacagcctcaacaggatgtcccaacccctagcgtgacagaacgtgacacc
aaacaagatgacactgcatctgatacccaacagccacagcttgaacctgacccagaagtc
ccttctaaagagcaaagccaagaaccggcagttcaactgcaagaagccaaagcagacaca
aaggaagctagcgaggagacagatgacgctcgaggacgggccaaagtacgcgccaagagg
agcaagagccgaagtagcagcagttcctcatccagttcctcttcaagctcctcttccagt
ggatccagctcctcttccagtggctccagcagcaggagcagctcctctggctcatcctcg
tcgtcttccagttcacgctcccgtagtcgcggcagggacagagatggccgagaccacaaa
cgccgcaggagaccgtcagacagggagcgcagaaagagtgggagcgagaggggacacaag
tcgtcaaaaggcagtggacgagaaagcaagagctccaaagacaagaattccaaacctgat
aggaagaggacgaattctgaaggaagcaggtcagggaggagatcgtccagaaacgagagg
gatcggaagtctgaccggaaggaacgacgttga
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