KEGG   Labeo rohita (rohu): 127179509
Entry
127179509         CDS       T09007                                 
Symbol
pnn
Name
(RefSeq) pinin
  KO
K13114  pinin
Organism
lroh  Labeo rohita (rohu)
Pathway
lroh03013  Nucleocytoplasmic transport
lroh03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:lroh00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    127179509 (pnn)
   03015 mRNA surveillance pathway
    127179509 (pnn)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lroh03019]
    127179509 (pnn)
   03041 Spliceosome [BR:lroh03041]
    127179509 (pnn)
Messenger RNA biogenesis [BR:lroh03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     127179509 (pnn)
Spliceosome [BR:lroh03041]
 Complex C
  Other components
   EJC/TREX
    127179509 (pnn)
SSDB
Motif
Pfam: Pinin_SDK_N Pinin_SDK_memA
Other DBs
NCBI-GeneID: 127179509
NCBI-ProteinID: XP_050989025
LinkDB
Position
17:7943004..7949794
AA seq 670 aa
MAVAVRSLQDQLEKAKESLKSVDENIRKLTGRDPSELRPGQNRRLTIPGPGGGRGRGINL
LRRGLSDSGGGPPAKQRDIEGALLRLAGDQRARRDSRHDSDAEDDDDVKKPALQSSVVAT
SKERTRRDLIQDQTMDERGKQRNRRMFGLLMGTLQKFKQESTVSTERLKRRQEIEQKLEV
QAEQERKKVESERRELFEERRAKQTELRLLEHKVELAQLQEEWNAHNTKLIKFIRTKTKP
PIFYLPGRMCSATQKLLEESQKKLNGVFDERREAFAEQLNKMEARPRRQSQRTGDKETED
SRRAEETKKEDQEEGKAGVGRTGNRHDVEMEDEEEDIVEEEAEESLEIREREGDQEQEQG
EEKDKREESERKAEEEDEEEDEEEVGTSGDKEEGEEQMEVAEVVREDEAQGKLQVESPEA
TVEEVGNVQKEEEQETEVEAQQDVVTDSQQTPESQMEMQPEECKQPQQDVPTPSVTERDT
KQDDTASDTQQPQLEPDPEVPSKEQSQEPAVQLQEAKADTKEASEETDDARGRAKVRAKR
SKSRSSSSSSSSSSSSSSSSGSSSSSSGSSSRSSSSGSSSSSSSSRSRSRGRDRDGRDHK
RRRRPSDRERRKSGSERGHKSSKGSGRESKSSKDKNSKPDRKRTNSEGSRSGRRSSRNER
DRKSDRKERR
NT seq 2013 nt   +upstreamnt  +downstreamnt
atggcggtggccgtgcgaagtttgcaagaccagctggaaaaagccaaggaaagcttaaaa
agcgtggacgaaaatattcgaaaactaaccggcagagacccgagcgaattaagaccgggt
caaaataggagattaaccatcccaggcccaggtggaggtagggggcgtggaatcaatttg
ctgaggcgtggactttcagatagtggtggaggacccccagccaaacagagagacatcgaa
ggggcactcttgaggctggcaggggatcagcgagccaggagagattcacgccatgacagc
gacgctgaggatgatgacgatgtcaaaaaaccagcgttgcagtcatctgtggttgctacc
tccaaagaacgtacgcgccgagatcttattcaagatcagactatggacgagagaggaaag
cagaggaaccggcgtatgtttggcctgttgatgggaacattgcagaaatttaaacaagag
tctactgtgtccacagagcggttaaagagacgccaagaaattgagcagaaattggaagtg
caggcagaacaggagcgtaaaaaagttgagagtgaaaggagagagctctttgaagaaaga
cgtgcaaaacaaacagagctgcgtcttctggagcacaaagtggagctcgctcaactgcaa
gaagagtggaatgcacataatactaagctcatcaagtttattcgcacaaagaccaagccc
ccaatcttctacctgcccggtcgaatgtgctccgctactcaaaagctcctggaagagtct
cagaaaaaattaaatggtgtgtttgatgagagacgtgaagcctttgcagagcaactcaac
aaaatggaggctcggccaaggcgtcagtcccagaggacaggtgacaaagaaacggaggat
agccgtcgggctgaagagacgaagaaagaagatcaagaggagggtaaggctggagtaggg
cggacaggtaacaggcatgatgtggagatggaggacgaagaggaagatatagttgaggag
gaagcagaggagagcttagagattagggagagggagggggatcaagagcaggagcagggt
gaggagaaggataaacgtgaggagagtgagaggaaggcagaggaggaagatgaggaggag
gacgaggaggaagtaggaacaagtggggataaggaagaaggggaagagcagatggaggtt
gcagaagttgtaagggaggatgaggcacagggtaagctgcaggttgagagtccagaagcc
acagttgaagaggtaggtaatgtgcaaaaggaggaagagcaggagacagaggtcgaggct
cagcaggacgttgtaacagactctcagcaaactcccgagagccagatggaaatgcagcct
gaggagtgtaaacagcctcaacaggatgtcccaacccctagcgtgacagaacgtgacacc
aaacaagatgacactgcatctgatacccaacagccacagcttgaacctgacccagaagtc
ccttctaaagagcaaagccaagaaccggcagttcaactgcaagaagccaaagcagacaca
aaggaagctagcgaggagacagatgacgctcgaggacgggccaaagtacgcgccaagagg
agcaagagccgaagtagcagcagttcctcatccagttcctcttcaagctcctcttccagt
ggatccagctcctcttccagtggctccagcagcaggagcagctcctctggctcatcctcg
tcgtcttccagttcacgctcccgtagtcgcggcagggacagagatggccgagaccacaaa
cgccgcaggagaccgtcagacagggagcgcagaaagagtgggagcgagaggggacacaag
tcgtcaaaaggcagtggacgagaaagcaagagctccaaagacaagaattccaaacctgat
aggaagaggacgaattctgaaggaagcaggtcagggaggagatcgtccagaaacgagagg
gatcggaagtctgaccggaaggaacgacgttga

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