Labeo rohita (rohu): 127179683
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Entry
127179683 CDS
T09007
Symbol
vcpip1
Name
(RefSeq) LOW QUALITY PROTEIN: deubiquitinating protein VCPIP1
KO
K11861
deubiquitinating protein VCIP135 [EC:
3.4.19.12
]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lroh01002
]
127179683 (vcpip1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lroh04121
]
127179683 (vcpip1)
Enzymes [BR:
lroh01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
127179683 (vcpip1)
Peptidases and inhibitors [BR:
lroh01002
]
Cysteine peptidases
Family C64
127179683 (vcpip1)
Ubiquitin system [BR:
lroh04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
OTU
127179683 (vcpip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VCIP135_N
OTU
OTU1_UBXL
DUF5817
Motif
Other DBs
NCBI-GeneID:
127179683
NCBI-ProteinID:
XP_050989320
LinkDB
All DBs
Position
2:29906039..29914622
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AA seq
1109 aa
AA seq
DB search
MSLIPGSKQKDRRILCGMCPDPQCQAKLIFPAHTSMSIECTECGQRHEQKNLANVEEVTD
PDVVLHNLLRNALLGVPGPPKKGSELVKVMGLSNYHCKLLSPILTRYGMDKQTGTAKLLK
EMNQGEIFECSLLGDRAFLIEQEHVSTVGYGRDRSGSLIYLHDTLEEIKKANSNRECLIP
VHVDGDGHCLVHAVSRALVGRELFWHALRENLKLNFKQNLDHYKALFQDFIDAAEWEDII
NECDPLFVPPEGVPLGLRNIHIFGLANVLHRPIILLDSLSGMRSSGDYSATFLPGLVPEE
QCRGKDGTLNKPICIAWSSSGRNHYLPLVGIKGLALPRLPAALLPKAWGVPQELIRKYVS
LDSSGSCVIGGDRSLQDKYLLRLVGAMEDVFMDKHGIHPALVADVHQYIYRRTGVIGVQP
EEVTEAAKKSVQEGRLHRCLVCNALSELHVPAEWLIPGGKLYNLAKSTHGTLRADKNYSF
PLNNLVCSYNPEKDVLVPDYKLSSLTACTWCHGTSVRRVRGDGSVVYLDGDRTNTRSQGG
KCGCGFKHFWEGKEYDNLPEAFPITLEWAGRVVRETVYWFQYEADPTLNSNVYDVTMRLV
TKHFPGEFGSEILVQKVVNTILHHTAKRSQDEYNPVAIEGAHVQDGREGSESATHPPTKI
ILTGQKGKTLHKEELVMSKTERVLQHSISEQAALSQRRSTDRLRQQDPRPSSPSSSSSSA
PPTPTKVPPTSGEKKIRVTTSDGRQAMLTLQPHTTYGELQNSIIQVFNLSPGQLCIRHGX
PPRELPPPRPEDQNQPVALQHGDRISVEALKESSPDTHMTQTHTHAPQTHAHSDPRLSRT
SSRELQDNIDLEMSSLCLLAALMGEDVWSYAKKLPHLFQQGGVFYNIVKKDMGLLDGKHC
TLPHLSGKTFVFNAAEERLELCVDTAGHFPVGPDVEELVQEALSQLRSDSASRSREGSPA
HGLRLGAGGAVRRKEQTVTAFQGKGHSLGSAPPEHPPIRRQHSSGVDLSNSARGEEITLS
GEELVRVAPGMLTLREGRGLGLEPAVIEAQRQRLQEMVSNIQASMDKHLRQHTAARHDVK
EEEEAPDKQEDMESHGAEPPSTFEPMDQS
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttgattccgggctcaaagcagaaggacaggcgcattttatgcgggatgtgcccg
gacccgcagtgccaggcgaagctcatcttccccgcacacacctccatgagcatcgagtgc
actgaatgcggccagagacacgaacagaagaacctcgcaaatgtggaggaagtgaccgac
ccagatgtagtgcttcataatttgctgagaaatgctttgctgggtgtgccaggccctcct
aaaaagggctcagagctggttaaagtgatgggactgtccaactatcactgcaagctgctc
tctcccatcctcacccgctatggcatggacaaacaaacaggcactgccaaactcttaaag
gaaatgaatcagggagagatcttcgaatgctcgcttcttggggaccgtgcatttctcatc
gaacaagagcatgtgtccactgttgggtatggacgggaccggtcagggagcctgatctac
ctacatgacactttggaggagatcaagaaagcaaactcgaacagagagtgtcttattccc
gtacacgtggacggagacggacactgcctggtccatgctgtgtccagggcattagttgga
cgtgagctcttctggcatgccctccgggaaaatctaaaactcaatttcaagcagaacctt
gatcactacaaagcccttttccaagacttcatcgatgccgcagaatgggaagacatcatt
aatgagtgtgacccgctgtttgtccctccagaaggggttcctttgggcctcaggaacatc
cacatattcggcctggcgaatgtactccacagacccataatcctgttggactccctgagc
ggtatgcgcagctcgggcgattactccgccaccttcctgccaggcctggttccagaggag
cagtgccgaggaaaagatggcactctgaacaagcccatctgcatcgcctggagtagctct
ggcagaaatcattatctacccctagtgggaatcaaaggcttggctttgcctcgtttacct
gctgcactgctcccgaaagcttggggtgttcctcaagagctcattcgcaagtacgtgagc
ttggactccagcggaagctgtgtgattggcggcgaccggagcctgcaggataagtacctg
ctgcgtctcgtaggcgcgatggaggacgtcttcatggacaagcacggcatccaccctgct
ctagtcgccgacgtccaccagtacatctatcgacgcactggagtgatcggcgtgcagccg
gaggaggtgacggaagcggctaagaaatccgttcaggaaggtcgtctccatcgctgcctt
gtttgcaatgctctttcagagctccacgtgccagcggagtggctcataccaggagggaaa
ctctacaacttggccaaatcgactcacgggacgctgcgagcggacaagaactacagcttt
cctttaaataatttggtttgttcctataacccagaaaaagatgttctagtgcccgactac
aaactcagctcactcacggcttgcacctggtgtcatggaacttcagtgcgccgcgttcgt
ggtgacggctccgtggtttatttggacggagaccgtaccaatactcgctcacagggtggg
aagtgcggctgtgggttcaaacacttctgggaaggcaaggagtacgacaatcttcccgaa
gctttccccatcactttggagtgggccggccgtgtggtgcgagagaccgtttattggttc
cagtacgaagcggatccgacgctcaacagcaatgtttacgatgtgacaatgcgacttgtc
acgaagcacttccctggtgagtttggaagtgagattctagtccaaaaagtggtgaacacc
attttgcatcataccgccaagaggagccaagatgaatacaatccggttgccattgaaggt
gctcacgtgcaggatggaagagaagggagtgaatctgccactcaccctcctacaaaaatc
atcctgactggacaaaagggcaaaaccctgcataaagaggaactggtgatgagcaaaacc
gaaagagtcttgcagcacagcatcagcgagcaggccgccctctcccagcgccgtagcacg
gatcgcttgcgccagcaggatcctcgcccatcatctccttcctcttcatcatcctctgct
cctcccacacccaccaaagtgccgcccaccagcggagagaagaagatacgcgtaacgacc
agcgatggccggcaggccatgcttacgctccagccacacaccacctacggtgagctccag
aactccatcatccaggtcttcaacttgtctcccggacagctgtgcatccgacacggcntt
ccccctagagagctgcccccgccgcgtcccgaggaccagaaccagcctgttgcgcttcag
catggcgaccgcatctctgtggaagcgctgaaagagagttcgcccgatactcacatgacc
cagacgcacactcacgcgcctcaaacgcacgctcactctgatccacgactcagccgcacc
agtagcagggaacttcaggacaacattgaccttgagatgtcatcactctgtctcctggca
gcacttatgggtgaagatgtctggtcatatgccaagaaactgcctcacctgttccaacaa
ggaggagtcttctacaatattgtgaagaaagacatgggtctgttggacgggaagcattgc
acactgccccacttgtcgggtaagacgtttgtgttcaacgctgcggaggagcgtttggag
ctgtgtgtggacacagccggccattttccagtgggccctgacgtggaagagctcgtccag
gaggccctttcccaactccgttcagactccgcctcccgtagccgcgagggaagccccgcc
cacggcctgcgattgggcgccggcggcgcagtgcgtaggaaagagcaaaccgtcacggcc
ttccaaggcaaaggtcactcactgggctccgcccctcctgaacacccaccaatcaggcgg
cagcacagcagcggcgtagatctcagcaacagcgctcgcggcgaagaaataacgttgtct
ggggaagagttggtgcgcgtagctccgggcatgctcactttacgcgagggccgcggattg
gggcttgagcccgccgtgatcgaagcccagcggcagcgcctgcaagagatggtttcaaac
atacaagcgtccatggacaaacacttgcgccagcacactgcagcaaggcatgatgtgaag
gaagaagaagaggctcctgacaaacaggaggatatggaaagtcacggagcggagcctccc
agcaccttcgaacccatggaccaatcttga
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