Labeo rohita (rohu): 127179821
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Entry
127179821 CDS
T09007
Symbol
shprh
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lroh04121
]
127179821 (shprh)
Enzymes [BR:
lroh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127179821 (shprh)
Ubiquitin system [BR:
lroh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
127179821 (shprh)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-2nd
SHPRH_helical-1st
Linker_histone
Helicase_C
zf-RING_UBOX
zf-C3HC4
zf-RING_2
PHD
zf-C3HC4_2
zf-RING_5
GCN5L1
TPR_12
VPS18_RING_C
TPR_10
LMBR1
Motif
Other DBs
NCBI-GeneID:
127179821
NCBI-ProteinID:
XP_050989525
LinkDB
All DBs
Position
17:4743907..4770732
Genome browser
AA seq
1650 aa
AA seq
DB search
MSSRRKRAPPVRMDEEAKRRLEWNMHEDRKNEGNCEDILESIPALSDSCHPGLVLESNQE
EANLCFMSSAGPEEGPSEERPSCSTQDSVPDTLELNVMPISALDQGWNALIGEFNLCLKI
PVMLGDNSFCLQQTGDTLSMSLNSHEIEVETCKSDFIGPVPIECSFGGILLEDLDWLQKR
KVIKLCHASGDESVKLKIFLIESGLGRPEFLSEGNGRIKKANQLLQKLMEFFYDFIIPEV
MENEEEECDTDLERQNVEELYDHVRHLHQTEAAEQSFDVQHPGLIPVLRPYQSQAVNWML
RREKYQSSSSQEQRLHFLWREMVTICGKKLFYNPYTGCLIREFPLAGVDWPGGILADEMG
LGKTVEVLALILCNTRQNLEHGVLTLPVGRSVNYFVPPPPLERQRTIKHEVRPKERIIYP
AVREMLLTAIKEMKVGKGASINAIFAYLRTMYKYDTLKNRNHIKKILTKLISEKIVEQIK
GRGLAGSFKLGKNYKEKKKKPATPRNKSVDKATPRRTSRRVSGQEKEASQTSYTTASDSE
DSVDPPLLTEELKCEPDSLTDSENPPQKISVDITDEDDKATTDKPQQETTKDIHIESSES
DPTQNSKPEPETPTRASVIPFNTPDYRFECICGELGLVDYKPRVQCLNCLLWQHAECVNY
KEENLETTPFYCPHCLVAMTPVSTGATLIISPSSICHQWVDEINRHIHTSSLRVLVYQGV
KRHGFIQPHILAEQDVVITTYDVLRTELNYVDIPHSNSKDGRRFRNQKRYMAIPSPLVAV
EWWRVCLDEAQMVECTTAKAAEMALRLTSVNRWCVSGTPVQRGLEDLYGLVLFLGVDPYW
VKYWWDQLLYRPYRHGNTTQLYNVIGQLLWRSAKKDVIDQIQIPPQTEEIHWLNFSPVEG
HFYHRQHEVCSQDALVKLRKISDWSIKLGSLDRRTVTTILYPLLRLRQACCHPQAVRGEF
LPLQKSTMTMEELLKSLQKKCRVECEEAHRQLVCALNGLAGIHIIRGEFVDAAEMYREVL
RSSEEHKARLKTDSLQRLHATHNLMELLNAKHPGIPPTLRDDSLKEEAEQLKQHYMAKVN
SEVSEAHQNLQPVLQHIKELKRKVNLRSPWWLDVIQQAIQYSMDDDLVGRIQNELTCSYK
QQANKLSLADKFRDARGLQFLLSTQMDDLMKSQKTVQDAVKKLEGPPSQQVIEEATLCHL
RPVRLPLNNCVFCKADELFTDYESKLFSHTVKGQTAIFEEMIEDEEGLVDDRLPTTSRGL
WAVSETERALKAILSFAKARRLESGLIEEGNSFMELFESWKKEYKLLHEYWMSLRDHVSA
IDELGMATERLRVRLPDEPKPKVLHIIEPHEVEQNRIKLLNDRAVAKSQLQKKLGQFLYL
TNLEKSQDKSTGGLNPEPCPICARPLGQEWAVLTCGHCFCNECIAIIVEQYSVGNRRRAI
KCAICRQTTSHSEISYVFTTQSANQGQDIPVKGSHSTKVEAVVRVLKKIQMTDPGAKSLV
FSTWQGVLDIIAKALFDNNMEFAQINGIHKFQENLSAFKYEEKINILLLPLHTGSNGLNI
IEATHVLLVEPILNPAHELQAIGRVHRIGQTKSTFVHRFLIKSTIEERMQAMLKTAEKSH
SSTSMKHSEASVFTVADLAELFTEDSESLE
NT seq
4953 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcagaaggaaacgtgcgcctccggtgcgcatggatgaggaggccaagaggaga
ctggagtggaatatgcatgaagatcggaaaaatgagggaaattgtgaagacattctggag
tcaatcccagcactgtctgacagctgtcatcctggactggtgcttgagagcaaccaggaa
gaggcgaacctgtgttttatgtcttctgcaggcccagaagaaggaccatcagaagagcgt
ccaagctgttccacgcaggattcagttccagatacactagaactgaatgtgatgccaatt
tctgctctggatcaggggtggaatgcgttgattggagagtttaacctgtgtctaaagatt
cccgtaatgctaggagacaattccttctgcttgcagcaaacaggtgacacattaagtatg
agtctgaatagtcatgagattgaggttgagacgtgcaaaagtgatttcatcggcccggtg
ccaattgagtgttcctttggtgggatattgttggaggatctggattggctacagaagagg
aaggtcattaaattgtgccacgcttcaggagatgaatcagtaaagctgaagatttttctt
atcgaatctgggttgggcagaccagaattcctgagtgaaggaaatgggcgcattaaaaaa
gcgaatcagcttctgcaaaagttaatggaatttttctacgacttcatcattcccgaggta
atggagaatgaggaggaagagtgtgacaccgatctggagcgtcagaacgtcgaggagctt
tacgatcatgtcagacaccttcatcagacagaagcagcggagcaaagcttcgatgtccag
cacccgggcctcatccctgtgctgagaccctatcagagccaggcggtcaactggatgctt
aggagagagaagtaccaaagcagcagctctcaagaacaaaggttgcattttctttggcgg
gaaatggtcacgatttgtggcaaaaagctcttttataatccctacactggatgcctgatc
cgagagtttcctctggctggggtggattggcctggcgggatccttgctgatgagatggga
cttgggaaaactgtggaagtactggcccttattctgtgtaacacccggcaaaacctggag
catggcgttctcactttacctgtgggacgatctgtgaattactttgtccctcctccacca
ttagagagacaacggaccattaagcatgaggtgagacccaaagagaggatcatttatcca
gctgtgcgtgagatgctgttgactgcgattaaggaaatgaaggttgggaaaggagcgtca
atcaatgctatttttgcttatctacggactatgtacaagtacgacaccttaaagaaccgg
aaccacataaagaaaatcctgaccaagcttattagtgagaaaattgtggagcagatcaaa
ggacgagggttagcagggtccttcaaactggggaagaactacaaagaaaagaagaagaaa
cctgccactcctcgaaataagtccgttgacaaggccactcccaggagaacatctcgccgg
gtttctggtcaggagaaagaggcatcacagacctcatatacgacagcatcagattctgaa
gacagtgtggatcctcctctcctcacagaggaactgaaatgtgagccagattctcttaca
gactcagaaaatccaccgcagaagatttcagtagacatcacagatgaagatgacaaagca
acaacagacaaaccccaacaagaaacaaccaaagacatccacattgaaagttcagaatca
gatcctacacaaaactcaaaacctgaacctgaaaccccaaccagagcatctgtgatccca
tttaatactccagattaccgctttgagtgtatctgtggagagctcggcctggtggactac
aagcctcgggtccagtgcctgaactgcttgctgtggcagcatgcagagtgtgttaactac
aaagaggagaacttggaaacgaccccattttattgccctcactgcctggtggccatgaca
cctgtgtctactggagccacacttatcatctcacccagctccatctgtcaccaatgggtg
gatgaaattaaccggcacattcacacttcttccctcagagtgctggtgtatcagggtgta
aagagacacggtttcatccagcctcacatcctagcagagcaggatgtggtcatcaccact
tacgacgtgctgcgcactgaactcaattacgtcgacatcccacacagcaatagcaaagac
ggccgccgattccgcaaccagaagcgctacatggccataccgagccctctggtggccgtg
gagtggtggcgtgtctgtttggatgaagctcagatggtggagtgcaccacagccaaggct
gcagaaatggctttgcgtctcacatctgttaatcgctggtgtgtcagtggaacacctgtg
cagagaggtttggaagacttgtatggtcttgtcctgttcttgggagttgatccctattgg
gtcaagtattggtgggaccagttactttatcgtccctaccgccatggcaatacaacacag
ctttacaatgtcattggtcaactactatggcgatctgccaaaaaagatgtcatcgatcag
atccagatccctcctcaaacagaagagatccactggctcaacttctctccagtagaggga
cacttttaccaccgtcagcatgaggtttgctcccaggatgcacttgtcaagctaaggaag
atctctgattggtcaataaagctgggtagtttggacagacgtaccgtcactaccatatta
tacccccttttacgtcttcgtcaggcctgctgccacccgcaagctgtcagaggagagttt
ctgcccctccagaagagcactatgacaatggaggaattgttgaagtcgttgcaaaagaaa
tgtcgtgtggagtgtgaagaagctcacaggcagctggtgtgtgctctcaacggtctggct
ggaatccacatcatcagaggcgagtttgtggatgcagcagagatgtacagagaagtgctg
cgatcatctgaagaacataaagcaagactgaagactgattcccttcagaggcttcatgca
acccacaatctgatggagcttctgaatgcaaagcatcctgggattcctccaaccttgaga
gacgacagtctcaaagaagaggctgagcagctgaagcagcattacatggccaaagtgaat
tctgaggtttcagaagcacatcagaacctacagcctgttcttcagcacattaaagagcta
aaacgcaaggtgaaccttcgctctccatggtggctggatgtcatacagcaggccattcag
tactccatggacgacgaccttgtgggccgaatccaaaatgagctcacttgcagttataaa
caacaagccaacaagctttcattggcagacaagtttcgagacgctcgtggtcttcagttt
ctgctcagcactcaaatggatgatttgatgaaatcgcagaaaacggttcaagatgctgta
aagaagctggaggggccgccatctcagcaagtcatcgaggaagcaacactttgccatcta
cgacctgttcgtctgccactgaacaactgtgtcttttgcaaagccgatgaactttttacg
gactacgagtcaaaactcttctctcacacagtaaagggacagacggccatctttgaggag
atgattgaagatgaagaagggttggtagatgacagactccccacgaccagtcgaggtttg
tgggcggtcagtgagacagaacgagcccttaaagccatcctgtcctttgccaaggcccgt
cgcttagaatctggactcatcgaggaggggaattctttcatggagctctttgagtcctgg
aagaaagaatataagctgttgcacgagtactggatgtcactgcgggatcacgtgtcggcc
atagatgagctgggcatggccaccgagaggcttcgtgtgcgtttacctgatgagcccaaa
cccaaagttcttcatatcatagaacctcatgaggtggagcagaacaggataaagctgctc
aatgacagggcagtggccaaatcacaactgcaaaaaaagcttgggcagtttctctatctc
acaaacctagagaagtctcaggataagtccactggagggttgaatccagaaccatgtccc
atctgcgctcgaccgctcggccaggagtgggccgtactgacctgcggacactgtttctgc
aacgagtgcatcgccattatcgtggagcagtacagcgtcggcaatagacgcagagccata
aagtgcgccatatgtcgacaaaccacttcacattcagagatctcgtatgtgttcaccact
cagagcgcaaaccaggggcaggacatccctgtgaagggtagccactccacgaaggtcgag
gctgtggttcgagtcttaaagaaaatccagatgaccgacccgggagccaagtctcttgtg
ttctccacgtggcagggcgtcttggacatcattgcaaaagcccttttcgacaacaacatg
gagtttgcacagatcaacggaattcacaaatttcaggagaacctgagtgctttcaaatac
gaggagaaaatcaacatcttgctgctgccactgcacacaggctcaaatgggctaaacatc
attgaagcgacgcatgtgctgctggtggagcccatcctaaaccccgcccacgagctgcag
gccataggaagagtgcatcggattggccagaccaaatccacattcgttcatcgatttctg
atcaagtccaccattgaggagcggatgcaagcaatgcttaaaacagcagaaaagagtcat
agttccacatccatgaagcattcggaggcctccgtgtttacagtggcagacctggccgag
ctgttcacagaggacagcgagtctcttgagtaa
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integrated database retrieval system
