Labeo rohita (rohu): 127180159
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Entry
127180159 CDS
T09007
Symbol
lrfn5a
Name
(RefSeq) LOW QUALITY PROTEIN: leucine-rich repeat and fibronectin type-III domain-containing protein 5
KO
K16358
leucine-rich repeat and fibronectin type-III domain-containing protein 5
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lroh04990
]
127180159 (lrfn5a)
Domain-containing proteins not elsewhere classified [BR:
lroh04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
127180159 (lrfn5a)
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
I-set
Ig_3
LRR_5
LRR_1
ig
LRR_9
Ig_2
fn3
DHU1_N
C2-set_2
Ig_5
Sp38
Motif
Other DBs
NCBI-GeneID:
127180159
NCBI-ProteinID:
XP_050990088
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All DBs
Position
17:8307077..8370158
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AA seq
785 aa
AA seq
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MEKLLVCLLVIGMAVKAQICPKRCVCQVLSPNLATLCAKKGLLFVPPNIDRHTVELRLAD
NFVTSVKRKDLANMTKLVDLTLSRNTISYITPHAFADLENLRALHLDHNRLTRIANDTFS
GMSKLHHLILNNNQLTLIHMGAFNDLLALEELDLSYNNLETIPWEAIQKMTSLHTLSLDH
NMIEYIPEGTFSLLQKLNRLDVTSNKLQKLPPDPLFQRAQVLATSGVMNPSSFALSFGGN
PLHCNCELLWLRRLNREDDLETCATPVHLSGRYFWSIPEEEFLCEPPLITRHSHEMRVLE
GQRVALKCKARGDPEPAIHWISPDGKLVSNTSRTLVYNNGTLDILISTVKDTGSFTCISS
NPAGEAHQTVELVIIKLPHISNSTNNIQEPDPGSSDISTSTRAGANGSNHTSDAKTSSDK
KVVMAEATSSTALIKFNFQRNIPGIRMFQIQYNGTYDDSLVYRMIPPTSKNFLVNNLAAG
TQYDLCVLAIYDDGITSLTATRVVGCVQFTTESEYLRCHFMQSQFLGGTMIIIIGGIIVA
SVLVFIIILMIRYKVCNSGDSAKGTSVTDVHSQTNGSQGCTVTPSASKQGALSLEEGEGC
KKSSAAPLPPPPDSQTHTSETSIPDCSTSTSLVSQSWTTPGSSGSLKPKRKPAPKPVPAA
TAEPKVEALPNAETQNTNRNNSTALQQAVPPPPSRFKDTPILRRARPSSSKYMTLPVEGA
RAKRRYSLNENLSKHHCYIGSQKLGNVVCKRSMSVNGMLVQMANSNLDSEKTAFSSSEWI
LESTV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaactgcttgtctgcttgttggttatcggaatggcagtgaaggcccagatctgt
ccgaagcgctgcgtctgtcaagttctatcccccaacctcgcaacactctgtgccaaaaaa
gggctgctctttgtaccgcccaacatcgacaggcacaccgtggagctccggctagctgat
aactttgtcaccagcgtcaaacggaaagacttagccaacatgaccaagctggtggatctt
actttgtcgaggaatacaataagctacatcactccacatgctttcgcggacttggagaac
ctacgagccttgcatctagaccacaaccggttgacgcgaatagccaacgataccttcagt
ggcatgtctaagctgcatcacctgattctgaacaacaaccaactgaccctcatccacatg
ggagcctttaatgacctactagccctcgaagaactggacttatcctacaacaacctggag
accatcccctgggaggccattcaaaagatgaccagcctacacacacttagtctggaccac
aacatgatcgaatacattcctgaggggactttttccctcctacagaagctcaaccgcttg
gacgtaacctccaacaagctccagaagcttccgccagacccgcttttccagcgggcgcag
gttctggccacgtccggcgtaatgaatccctcctctttcgctctgagctttggaggaaat
cctttacactgcaactgtgagctgctgtggcttcggcggctcaatcgggaggacgacttg
gagacctgcgccacacctgtgcacctctctggacgctatttctggtccatcccggaggag
gagttcctctgcgaaccgcccctcatcacccgccactctcacgagatgagggtccttgaa
ggccaacgggtagcgttgaaatgcaaagccaggggagatcccgaacctgccatccactgg
atatctcccgatgggaagttggtttcaaacacgtcacgcacactggtttacaacaacggc
acgttggacatcctgataagcacagtaaaggacacaggctctttcacgtgcatttcctcg
aatcctgccggggaggcccaccagaccgtggaactggtcatcatcaagctcccgcacatt
agcaacagcaccaataacatccaggagcctgacccgggctcttctgacatctctacttcg
acaagggcgggagcaaacggcagcaaccacacaagtgatgccaagactagctccgataag
aaggtggttatggcagaagccacatcgtccacagcactcatcaagtttaacttccagagg
aatatacctggaatacgcatgtttcagattcagtataatggaacctacgatgactctctt
gtttacagaatgattcccccaacgagtaaaaacttcctggtgaataacctggccgccggg
acgcagtacgacctctgcgtgctggccatttacgacgacggcattacctccctgacggct
acgcgggttgtgggctgcgtgcagttcaccaccgaatccgaatatctgcgctgccacttc
atgcagtcccagtttctgggcggcaccatgataatcatcatcgggggcataatcgtcgcc
tccgtcctcgtcttcatcatcatcctcatgatccgctacaaggtgtgcaacagcggcgac
tccgccaaggggacctcggtcaccgacgtgcactcgcaaaccaacggctcgcaaggatgt
accgtcacgccgtccgcgtccaaacaaggtgctttgagcttggaggagggcgaggggtgt
aaaaagagctccgccgcacctcttcctccgcctccagattcccaaacccacacctcagag
acctccatcccagactgctccacctccacttccctggttagccaaagctggacaactccc
ggctcttcagggtcactaaagccaaagcgcaaaccagcgccaaaacccgtcccggccgcc
accgccgagcccaaagtagaggcgctgcccaacgcagagacgcaaaacaccaaccgcaac
aactccaccgctcttcagcaggccgtcccaccccctccatcccgcttcaaagacactcca
attttaaggagggctcgtccgtcttcgtccaagtatatgacactgcccgtggaaggagcg
cgggctaaacgcaggtactctttgaacgagaacctgtcgaaacatcactgctacattggc
tcgcagaagctgggcaacgtggtttgcaagcggagtatgtccgtgaacgggatgctagtc
caaatggcgaactctaatctagacagtgagaaaactgctttttccagttcagagtggatt
ctagaaagcaccgtgtga
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