Labeo rohita (rohu): 127180750
Help
Entry
127180750 CDS
T09007
Symbol
cstf3
Name
(RefSeq) cleavage stimulation factor subunit 3
KO
K14408
cleavage stimulation factor subunit 3
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127180750 (cstf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127180750 (cstf3)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
127180750 (cstf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
NRDE-2
TPR_16
TPR_19
TPR_6
Motif
Other DBs
NCBI-GeneID:
127180750
NCBI-ProteinID:
XP_050990962
LinkDB
All DBs
Position
18:28821106..28842017
Genome browser
AA seq
716 aa
AA seq
DB search
MSTETPPDQAAEYIPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ
FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE
KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM
INIEQLWRDYSKYEEGINVHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ
NSPQEAQQVEMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQY
LEQSSKLLAEKGDMNNAKLFSDEAANIYERAIGTLLKKNMLLYFSFADYEESRMKHEKVH
SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRSIFKKAREDPRTRHHVYVTAALMEY
YCSKDKSVAFKIFELGLKKYGDIPEYILAYIDYLSHLNEDNNTRVLFERVLTSGSLSPEK
SGEIWARFLAFESNIGDLASILKVERRRFMAFKDEYEGKETALLVDRYKFMDLYPCSPSE
LKALGYKDVSRAKYAALIPEAVVTPSAPALKDEADRKPEYPKPDTSQMIPFQPRHLAPPG
LHPVPGGVFPVPPTAVILMKLLPPPSCFTGPFVQVDELMESLRRCVLPETVDAAVELITG
KQLEMSSEGNGPVENHAVANKSLKRPNADSDEEEDKGSIAPPIHDIYRARQQKRIR
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgaaactccaccggaccaggcggcagagtacatcccagagaaggtgaagaaa
gcagagaagaagttggaagaaaatccgtatgacctcgacgcttggagcatactgattcgt
gaagcacagaatcaacccatagacaaagcaaggaagacatatgagcgccttgtcgcccag
tttcccagttcgggcagattctggaagctatacattgaagctgagatcaaggctaaaaac
tatgacaaggttgaaaagttatttcagaggtgcttaatgaaggttctgcacattgacctg
tggaagtgctacctctcatatgtacgggaaaccaaaggaaaactgcccagctataaggaa
aagatggcacaggcttatgattttgccttggataagattgggatggagattatgtcctat
cagatttgggtggattacatcaatttcctcaaaggagtagaggccgtggggtcgtacgct
gaaaatcagcgcatcacagccgtcagacgtgtttatcagagaggctgcgtcaaccccatg
attaacatagaacaactctggagggactacagcaaatatgaagagggcataaatgtgcac
ttggctaaaaagatgattgaagaccggagcagagactacatgaatgccaggagagtcgcc
aaggagtatgagacggtgatgaagggtttggaccggaatgccccttcagtgccgccccag
aactccccacaggaggcccagcaggtggagatgtggaagaaatacatccaatgggagaag
agcaacccactgcgtaccgaagatcagaccctcatcaccaagagagtgatgttcgcctat
gagcagtgccttttggtgcttggccatcaccctgacatctggtacgaagctgcccagtac
ctggaacagtccagcaaactactggcagaaaaaggggacatgaacaatgccaagctgttc
agtgatgaggcggctaacatctacgagcgtgccataggaactctgctcaaaaagaacatg
ctgctgtatttctcttttgccgattatgaagagagtcgtatgaagcacgagaaggttcat
agtatatacaaccgcctcttggccatagaagatatcgaccctactttggtttatatccag
tacatgaaattcgcaagaagagctgaaggcatcaagtctggccgttccatctttaagaag
gccagagaggatcctcgcacacggcatcatgtgtacgtcactgctgctcttatggaatac
tactgcagcaaggacaaatctgtggcctttaagatatttgagcttggactgaagaaatac
ggtgacattcctgagtacattttggcgtacattgattacctctctcatttaaatgaggac
aacaacactagagtcctgtttgagagagtcctgacgtccggcagtctttcccctgagaaa
tctggggaaatctgggcacgcttcttggcctttgagagcaacatcggggacttggccagt
atcctgaaggtggagcgaaggcgcttcatggcctttaaagacgagtatgagggaaaggag
acggctctgctggtggacagatacaagttcatggacttgtatccctgctcccccagtgag
ctcaaagccctcggttacaaggatgtgtctcgtgccaaatatgcagcactgatcccagag
gcggtggtcactccctctgcccctgcgctgaaagacgaggcagaccgcaaacctgagtat
cccaaacctgacaccagccagatgattcctttccagccacgtcatctggcgcctcctgga
ctgcatcctgttcctggaggagtgtttcctgtccctcccactgctgtcatcctcatgaag
ctgctgcctcctcccagctgttttacaggtccttttgtgcaggtagatgagctgatggag
tctctcagaagatgtgtattaccagagacggtagatgctgctgtagagttgatcactgga
aagcagttagagatgagcagtgaaggaaacgggcctgtggaaaaccacgctgtggcaaac
aagtccttgaaaaggcctaacgccgattcagacgaggaggaagacaaaggatcgatcgca
ccaccaatccacgacatctatcgagcgcgacagcagaagaggatccgatga
DBGET
integrated database retrieval system
