Labeo rohita (rohu): 127180788
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Entry
127180788 CDS
T09007
Symbol
dhx36
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127180788 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127180788 (dhx36)
03012 Translation factors [BR:
lroh03012
]
127180788 (dhx36)
Enzymes [BR:
lroh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127180788 (dhx36)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
127180788 (dhx36)
Translation factors [BR:
lroh03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
127180788 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
NB-ARC
AAA_14
TsaE
TTC3
NPHP3_N
ABC_tran
Motif
Other DBs
NCBI-GeneID:
127180788
NCBI-ProteinID:
XP_050991049
LinkDB
All DBs
Position
18:21798205..21842001
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AA seq
1018 aa
AA seq
DB search
MNYGYGNGRGRRGGGRRFGDGGSRWGGGAGSSGGGGYTRSSELDSKEEQGHGEGRRGGGR
GKHPPHLKGREIGLWYAKRGGIKRAETERKSRAVVQMDEQREQHITELLNSVQRDASRDA
HPSTSQSWRVKEEPSGHSYFDGDDPPELQNIKVPKIEPKAEKPENEDELVASVKEDVNDT
DLEYLFQDVVRIPSLDEKLKKDQQKKKDNASYLDMLKFREKLPSYEMREKLVRLISANQV
LVISGETGCGKTTQVTQFILDDFIERGMGSLCRVVCTQPRRISAISVAERVAAERAESVG
EGKSCGYQIRLQSRLPRKQGSVLYCTTGIILQWLRSDPYLSSISHLVLDEIHERSLQSDV
LLTIVKDLLTARDDLKVVLMSATLNAEKFSKYFNNCSMIHIPGFTYPVNEYLLEDVVELL
RFKPQHQDRRPRYRRGFMHGQNVQPEKEQKEAEYRESWPCFNRTLRDRYSDSTIDTLEMM
DDDDKINLELIVALIRHIVMKEDDGAILVFLPGWDTISTLNDLLMADQMFKSDRFIIIPL
HSLMPTVSQTQVFKKPPPGVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDTQNNIR
TMTAEWVSLANAKQRKGRAGRVSPGKCYHLYNGLRASLLDNYQLPEIQRTPLEELCLQIK
ILKLGPIASFLRKTMDPPSDKAIELAITHLVDLNALDRNEELTPLGFHLARMPVEPHIGK
MILFGALLGCLDPALTIAASLSFKDPFFIPLGKEKIADHRKKLLSRNSRSDHLTLVNAFW
GWEDAKKQGSRFEKEYCWENFLSANTLQMLQNMKGQFAEHLLAAGFVNSKDPKDPSSNIN
SENEKLIKAVIVAGLYPKVAKIRPSHKKRPMPVKVYTKAEGKVCIHPKSVNAEETRFHYT
WLIYHLKMKTTSIFLYDCTEVSPFSLLFFGGDISIQRDQDQETIAVDEWIVFQSPARIAH
LVKDLRKELDVLLEEKIKSPRPVVWNDQGSKDCAVLSAIIDLITTQETPAGGPRRGSQ
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgaattatgggtatggtaatggacgcggtcggagaggagggggtcggcggttcggagat
ggaggttccaggtggggtggaggggctggatccagtggaggtggaggatacacgaggagc
tccgaattggactcaaaagaagaacagggacatggagagggacgaagaggaggaggaaga
ggcaaacatccaccccatttgaagggtcgagaaataggactgtggtatgccaaaagggga
ggaattaaaagagctgagacagagaggaaatctagggctgttgttcagatggatgaacaa
cgagagcaacacattactgagctgctaaactctgtccagagagatgcaagcagagatgcc
cacccctccacatctcagagttggagggtgaaggaggagcccagtggccacagttacttt
gatggagatgatcctccagaacttcagaacataaaagtgccaaaaattgagcctaaagca
gagaaaccggagaatgaggatgagttggtagcaagtgtaaaagaggacgttaatgacact
gacctggaatacttattccaagatgttgtacggataccctccctggatgagaagctcaag
aaagatcagcagaagaaaaaagataatgctagttaccttgatatgctgaaatttagagag
aagctgccttcctatgaaatgagagagaagctggttaggctaatcagtgctaaccaggta
ctggtaatcagtggagagactggctgtgggaagaccacccaggtcactcagttcatcctt
gatgacttcatcgagaggggcatgggctctctctgcagggtggtttgcacacagccacgg
cgtatcagcgccatatctgttgcagagagggtggctgcagaacgggcagaatcggtggga
gaggggaaatcctgtgggtatcagatccgtctacagagtcggttaccacggaaacaaggc
tcagtgttgtattgtacgacgggcattattcttcagtggctccgctcagatccatatctc
tcaagcataagtcatctggtcctggatgaaattcatgagaggagtcttcagtctgatgtt
cttctcaccattgtgaaggacctgttaactgcacgggatgacctaaaagtagtcctcatg
agtgccacgcttaacgctgagaaattcagcaaatatttcaataattgttccatgatccac
attcctggattcacatacccagtgaacgagtacttactggaggatgtggtggaattgctt
agattcaagccacaacatcaggaccgcagacctcgctataggagagggtttatgcatggc
cagaatgttcaaccagagaaagaacagaaagaggcagaataccgtgagagctggccatgc
ttcaaccgtacactcagagatcggtactcagacagcaccattgacacgctggagatgatg
gatgatgatgacaagatcaatctggagcttattgtagcattgatcagacacatcgtgatg
aaagaggatgatggagcgattctagtgtttctacctggatgggacaccatcagcaccctg
aatgatttgctcatggctgaccagatgtttaagtcagatcggtttatcatcatccccctc
cactctttgatgcccacagtgtctcagactcaggtgttcaaaaagccacccccaggagtg
cgcaagattgtgatcgctaccaacatcgcagaaaccagcatcacgatagatgatgttgtg
tatgtgatagatggagggaagattaaagaaactcattttgacacccagaacaatattagg
accatgacagcagagtgggtgagcttagccaatgccaaacagaggaagggccgtgctggc
agagtgtctcctgggaaatgctatcacctgtataatggactgagggccagtctcctggat
aactaccagctacctgagatccaacgcactccactggaagagctttgcttgcaaataaag
attctaaagttgggacccattgcgtctttcctgcgaaaaacgatggaccccccgtcagac
aaagcgatagagctggccatcacacacctggtggacctgaatgctctggaccggaatgaa
gagttaactccattaggatttcatcttgcccgtatgcctgtagagcctcacataggaaaa
atgattctgtttggggctcttctgggctgtttggatcctgcactcaccattgcagccagc
cttagttttaaagatcccttcttcataccactgggaaaggagaagattgcggaccacaga
aagaaattgctctcccggaactctagaagtgatcatctcactcttgtcaatgcattttgg
ggctgggaggatgctaagaaacagggcagcaggtttgagaaggaatactgctgggaaaac
ttcctttctgcaaacacgctacagatgcttcagaatatgaaaggtcagtttgcagagcat
cttttggcagctggctttgtgaatagtaaggaccctaaagatcccagctctaacatcaac
tcagagaatgagaagctgattaaggcggtgatcgtagcaggtctgtaccctaaagtggcc
aagattcgccccagtcataagaagagaccaatgccagtgaaggtgtatactaaggctgaa
gggaaagtttgtatccaccctaaatctgtcaatgcagaggaaactcggttccactacaca
tggctcatttatcacctgaagatgaagaccaccagtatctttctctatgactgcaccgaa
gtgtctccattttccttgttgttttttggaggggatatttccatccagagggaccaggac
caagagacaatcgcagtggacgagtggattgtgtttcagtccccggcacgcattgctcac
cttgtcaaggacctgaggaaggagctggatgtgttactggaggagaagataaagagtcca
cgtcctgtagtctggaatgaccaggggtctaaagattgtgctgttctctccgctataatc
gacctcatcacaacacaggaaacccctgctggaggccccaggaggggcagccaatga
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