Labeo rohita (rohu): 127180856
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Entry
127180856 CDS
T09007
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127180856 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lroh03021
]
127180856 (sf3b3)
03041 Spliceosome [BR:
lroh03041
]
127180856 (sf3b3)
03036 Chromosome and associated proteins [BR:
lroh03036
]
127180856 (sf3b3)
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
127180856 (sf3b3)
Spliceosome [BR:
lroh03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
127180856 (sf3b3)
Complex B
127180856 (sf3b3)
Complex C
U2 SnRNP specific factors
127180856 (sf3b3)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
127180856 (sf3b3)
TFTC complex
127180856 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
127180856
NCBI-ProteinID:
XP_050991136
LinkDB
All DBs
Position
18:complement(11815651..11844539)
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISHAIHGNFSGTKQQEIVVSRGKILELLRPDANTGKVHTLLTMEVFG
VIRSLMAFRLTGGTKDYVVVGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRMKYFDTIPVAAAMCVLKTGFLFVSSEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMSCQIADLANEDT
PQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGTI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQAQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAIFNQVAFP
LQYTPRKFVIHPETNNLILIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGSGQWASLVRMINPIQGNTLDLVQLEQNEAAFSVAVCRFSSGG
DDWYVLVGVARDMILNPRSVGGGYIYTYRLVGGGDKLEFLHKTPVEDVPLAIAPFQGRVL
VGVGKLLRIYDLGKKKLLRKCENKHVPNLVTGIHTIGQRVIVSDVQESLFWVRYRRNENQ
LIIFADDTYPRWVTTACLLDYDTMAAADKFGNICVVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEVIINYHIGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVSEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtacaacttgaccctgcagcgggcaactggcatctcccatgccatccatggc
aacttctcaggaacaaagcagcaggagattgttgtttcccgtggcaaaattctggaactg
ctgcgtcctgatgccaacacggggaaggtccacacgctgcttactatggaggtgttcggt
gtcattcgctccctcatggccttcaggttgactggtggaactaaagactatgttgtggtt
ggaagtgactctggccgtattgtgatcttggagtaccatccctccaagaacatgtttgaa
aagatacaccaggagacgttcggcaagagtggctgcagacgtatcgtgccagggcagttc
ctcgctgtggacccaaaaggcagagctgttatgataggtgccatagagaagcagaagttg
gtatacatcctgaacagagatgcagctgcccgccttaccatctcctcccctctagaggcc
cacaaggctaatacgcttgtctatcatgtggttggtgtggatgtgggctttgagaacccc
atgtttgcctgcctggagatggactatgaggaggcagataacgatcccactggagaggct
gcggcaaacacacagcagactctgaccttttatgagttggacttgggcctcaaccatgtg
gtgcgcaagtacagcgaggcgctggaggaacacggcaacttcctcatcacagttcctggt
ggttcggatggtcccagcggtgtgctcatttgctctgagaactatatcacctacaaaaac
tttggggaccaaccagacatccgctgccccatcccacgcagaaggaatgacctggatgat
cctgagagaggcatgatctttgtctgctctgccacccacaagaccaaatccatgtttttc
tttctagcccagacagaacagggagacatctttaaggttactctagaaactgatgaggag
atggtgacagagatcaggatgaagtattttgataccatcccagtggctgcagccatgtgt
gttctgaagactggtttcttatttgtttcttcagagtttggaaaccactacctgtatcag
attgcccacttgggtgatgacgacgaagagccagagttttcctctgccatgcctctggag
gaaggagacacattctttttccaacctcgcccacttaagaaccttgtgctggttgacgag
caagaaaatctttctcccatcatgtcctgccagattgctgatttggcaaacgaagacacc
ccgcaactgtatgtggcgtgtggcagaggacccagatctaccctgagagttttgagacat
ggactggaggtttcagaaatggctgtctctgaactgcccggtaaccccaatgctgtgtgg
actgtcaggagacatgtggaagatgagtttgatgcctacatcattgtgtccttcgttaac
gccaccctggtgctttctattggtgagactgtggaagaagtgacagactctggtttcttg
ggcaccacacccaccctgtcttgctcgttgcttggggaagatgcacttgtgcaagtctac
cctgatgggatccgtcacatccgtgcagataaaagagtgaatgaatggaaaactccaggg
aagaagacaattgttcgatgtgcagtcaatcagagacaggtggtcattgctttgactgga
ggagaactggtctactttgagatggacccgtctggacagctgaatgaatacactgagagg
aaggagatgtctgcagatgtggtgtgcatgagtttggcaaatgtgccccctggtgaacag
cgttcccgttttctcgctgttgggttggtggacaataccgtccgtatcatctccctggat
ccatccgactgtctgcagccgttgagtatgcaggctcttcctgcccagcccgagtctctg
tgtattgtggaaatgggcggagtggaaaaacaggatgagttaggagaaaaaggcaccatc
ggcttcttatacctcaatattggcctgcagaacggagtgttactgcgtaccgttttggat
ccagtgaccggggacttgtctgacactcgaactcggtatctcggctctcgtcccgtcaag
cttttcagagtccgaatgcaggctcaagaagctgttctggcaatgtctagtcgttcctgg
ctgagttactcataccagtctcgtttccacctgaccccactgtcatatgaaaccttggag
tatgcttcagggttcgcttctgaacagtgccccgagggtatcgttgcaatttccaccaac
acgctgaggattttggctcttgagaaactgggtgccatcttcaaccaagtggcattccca
ctgcagtacacgcctcgcaagtttgtcattcacccagagacgaacaatctgatcctgatc
gaaacagaccacaacgcctacactgaagccaccaaagcccagcgcaagcagcagatggct
gaggaaatggtggaggcagcaggagaggatgaaagagagctggctgcagaaatggcagca
gctttcttgaacgagaacctgccagaagccatctttggggcacctaaagcaggctctgga
cagtgggcctcattagtacgcatgattaatcccatccagggcaacacactggacctggtc
cagctggagcagaatgaggctgctttcagtgtggctgtatgtcgattttccagtggtggc
gatgattggtatgtgttggtgggtgttgccagagatatgattctaaatccacgctccgtt
ggtgggggttatatttatacctaccggctagttggaggtggggacaagctggagtttttg
cacaagacgcccgtcgaggacgtgccactggctattgctccctttcagggacgagtgttg
gttggagtgggcaaactcttgcgcatctatgacttgggaaagaagaaacttttacgcaag
tgtgaaaacaagcatgttcctaacttggtaacaggcatccacaccattggccagcgtgtg
atagtgtctgatgttcaggaaagtctgttctgggtgcgttacagacgcaacgagaaccag
cttatcatctttgcagatgatacatatcctcgctgggtcacgaccgcatgccttctcgat
tatgacaccatggctgctgcggataagtttggaaatatctgcgttgtccgcctgcctcct
aacaccagcgatgatgttgatgaggaccccacagggaacaaagcattgtgggacagagga
ttgcttaacggagcatcacaaaaggcagaggtgattattaactatcacataggagagacg
gtgctgtccctgcagaaaactaccctcatccctggaggatcagagtccctggtgtacacc
acgctatcgggaggcatcggcatcttggtgccgttcacctctcatgaggatcatgatttc
ttccagcacttggaaatgcacatgcgctcagagtttccccctctgtgtggtcgagatcac
ctcagcttccgctcatactatttcccagtgaagaatgtgatcgatggagatctttgtgag
cagtttaactctatggacccccataagcagaaaagtgtctctgaggaactggaccgcaca
cctccagaggtgtccaagaaactggaagacatccgaacacgctatgccttctag
DBGET
integrated database retrieval system
