Labeo rohita (rohu): 127180884
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Entry
127180884 CDS
T09007
Symbol
nlrc5
Name
(RefSeq) NLR family, CARD domain containing 5
KO
K22615
NLR family CARD domain containing 5
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
lroh04054
]
127180884 (nlrc5)
Pattern recognition receptors [BR:
lroh04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
127180884 (nlrc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_8
AAA_16
LRR_NXF1-5
AAA_30
Atypical_Card
nSTAND3
Motif
Other DBs
NCBI-GeneID:
127180884
NCBI-ProteinID:
XP_050991204
LinkDB
All DBs
Position
18:11195579..11226528
Genome browser
AA seq
1730 aa
AA seq
DB search
MRMERMDWPVDVRTQVDQAGSELVELLCRQNSDVLDRIFALVEPKRLDQIQSLTNNRDRV
SAIVEYFRNSDRNLCTQFLSTVYQYSENIPFLLETTLVSIAGYTHDHLQSYTDALKDMVL
QKHKSVAQAVVKDIRLDDTWVYLRHRNLPRGKDRNIQPQASLDNHEGEESEHKVSVESLL
KTTSRVVMLLGQAGSGKTLLVHCLGRSWAEGSFPSIDLLFLLEFRQLNLISRNLSLKELL
FLYYPACGDDKEQSDAVFEFILSKPEKVCFIIDGYDEFRAKLTHPERLESNIDPSKLLPM
TDLLSGLCNRKFLQGCTVLVTCRPRDVTDMFGSPGFITCELQGFDRLGVKEYAEQYFHKK
GDELKKKAVNLLMDNRHLLSMSHIPGLCHICCVCMDHLFSSDGTHLQLPTSLTQIYMQIL
LAFLKRIDEGVVSGTSPLQRHRTKIDEMSQLALKGLDESTIVFMDTDVSPELQNFGIKSG
ILSCVKLTFEDGSSGRGFTFMHLTMQEFLAALHLMTSQSITESQLKKKLNLKTRWTTKID
PKTVFTDSLHLYVCGLAAEACTYSLIQLKGAESTKAWVQKRQAAVRNVLLGFSGSTSQTG
PKIVELCRCAYETRDAKLARAIGSRPQFEMRNIRLNTVDMDSLAFVTAAADQNVCLDFGG
CSIDLDCLEILPSFKTVDHLIFRSRKYDDKFAEALCGILCKLQALRQLDFISGGLTDVGA
AKLARALEDCPNITHLNVSDNSLKDEGIREIAETLSKLPNISSVLMGKNSISTDGIITLI
ERMAACPSVQEVRVEANKEISLFFSQSSDTVCENTDLNNKEEPKSVTIKQSNINVSNVVS
LCNKLRGFSHITLLDLSKNSLGNKGLKKILDLLPKLGMIQEIKVGENGVDMDGVVMLASA
LCNQKNLKRVDASENGKKQLALWFDTSRRHNSRQLAPNVTRVHLHKKLSLTHSDIKPVYM
TKLCKQLVKCENLLDIEFSHLKLSNESVEKLMLILPEMSSLQLLNLSHVDLSTNGALLLV
RSLADCQRVTAVELRHQAEAFIKFVPEKAEAAICKLTEYKLCKSSVEKLSKILENCPRLS
ELDLSHNLLRDDGVKCFVDYLPKLKISSSVSLTGNRITQIGALHLVNSMNTCEKVVAVEV
SLGVEDQSLIKFVQEHVNGKTLRLRDCSFEVIHLKKLVEILNRCPRLLTLELSSNSLQSQ
GLLLDSLVELSTIQTVKLGNNCLSSEQIEYFVKQFGSCHQPRDIRIEEPWLTGSAVVSLV
AKCLTLQPHIKEIRVRRASINIITEGNSGLSSTFVAHSEKFSPALQSISFDDCDIEGQHL
AALTLPIQKCNALQDLRFSQLKVDRKCADFFSAVIPFLQNLRNLTLDLKGAAEDEVETLA
EALPDTTTFESLGLSQLVLSDRGAAVLGRALQSVPNLELINLSQCSGWTEARGRDLVRGL
MQCLSLAEIRLDSVVLDEEGVTILAQGFSRLTSLRRLSLNNIRVVTSETFVNGTGILCLL
ASFKSFRQMEEIELESWRMGDSGIHELVKCIPSWTELVKLSLSDNNVTDQAGEKLLMALS
HCRLLQKLQLSKNQLGLSSAAKLAQVLPLLPQLSELNLSENQLGPQGSLALCDGLMSMKA
LKILHLTSIGSSDLVGVASSLKNCPSIEDISLSWNGCSDSLAQTLAEILPLCTKLRRLDL
EANNISTAGATVIAKCLPLCPFIEVIRLWRNPIAKDDENLKDQRLNFSSV
NT seq
5193 nt
NT seq
+upstream
nt +downstream
nt
atgaggatggagaggatggactggccggtggacgtccggacacaggtggaccaggcgggt
agcgaactggtggaattgctctgcagacaaaacagtgatgttctggatcggatctttgcc
ttagtggaacctaaaagattggatcagatacagtcactgaccaacaacagagaccgtgtc
tccgccattgtagaatactttaggaattcagaccgaaacttatgtactcagtttctctcc
actgtatatcagtacagtgaaaacattccctttcttcttgaaacaacactggtgtccata
gcaggttacacacatgatcatttacagagctacacagatgctcttaaagacatggtgctg
caaaaacacaagtcagtggcacaagctgtagtaaaagacatccgtctggatgacacatgg
gtgtatttaagacacaggaaccttccacgagggaaagacaggaacatccagcctcaagcc
tctctagacaaccatgaaggtgaagaatcagagcataaagtgtctgttgagtctcttttg
aaaaccaccagcagggttgtcatgctgctgggccaggctggatctggtaagacactactg
gtgcactgcctcggccgtagctgggctgaaggctccttcccgtctattgacctgctgttc
ctgctggagttccggcagcttaatcttatctcacgtaacctgtccttgaaagagctgctc
tttctgtactaccctgcttgtggtgatgacaaggagcaaagcgatgcagtgtttgaattc
atcctctccaaacctgagaaggtctgcttcataatcgacgggtatgatgagtttcgtgcc
aagcttacgcatcctgaaaggctggagagcaacattgacccaagcaaacttctcccaatg
acagatctcctctcaggactgtgcaatcgtaaatttcttcaaggttgcactgttttggtc
acctgcagaccacgagatgtgactgacatgtttggaagccctggtttcataacctgtgag
cttcaagggtttgaccgattgggtgtgaaggaatacgcagagcagtacttccataaaaaa
ggagatgaactcaaaaagaaggctgtaaacttgttaatggacaaccgacacctcttgtcg
atgtctcacatacctggactctgtcatatttgctgtgtatgtatggatcatctgttctcc
agtgatggaactcatctacagctaccaacgtccttaacccaaatctacatgcagatcctc
ttggcgttcctcaaacgcattgatgaaggtgtggtgtctggtacatctccactgcagaga
cacagaacaaaaattgatgagatgagccagttagccctcaaaggacttgatgaaagcact
atagtcttcatggatacagatgtgtctccagaactccagaattttggcatcaaaagtgga
atactgtcttgtgtgaaactgacttttgaggatggatcttcaggtcgtggtttcaccttc
atgcaccttacaatgcaggagtttctcgctgctctccacctcatgaccagtcagagcatc
actgagagtcaacttaagaagaagcttaacttgaaaacccgctggaccaccaagattgat
ccaaaaactgtctttacagactctctccatctttacgtatgtgggcttgcggcggaggcc
tgcacgtacagtttgatccaacttaaaggagccgaaagcaccaaagcttgggtacaaaag
cggcaagcagccgtccgtaatgttttgctaggtttctcaggaagtaccagtcaaacaggc
cccaaaattgtggagctgtgtcgatgtgcttatgagacacgagatgctaagttggcaagg
gctattggttcaagaccacagtttgaaatgcgaaatatcagactcaacactgttgacatg
gattccttggcatttgtaacagcggctgctgatcagaatgtatgtctggacttcggtggc
tgttcaattgacctggattgtttggaaatcctccctagttttaagactgtggatcatctc
attttccgtagccggaaatatgatgacaagtttgcagaggctttgtgtggtatcctgtgt
aaactccaggctttgcggcaattggattttatcagtggaggtcttactgatgttggagct
gctaaacttgccagggctttggaggactgtccaaacatcacacacctaaatgtcagtgat
aactctttgaaagatgaaggcataagagagattgcagaaacactatccaaactgcccaac
atctcctctgttttgatggggaagaacagcatctccacagatggaattatcacactcatt
gagagaatggctgcctgcccttctgttcaggaagtccgtgttgaggccaataaagagatc
agccttttcttctcacaaagctctgacacagtctgtgaaaacacagacttaaataacaaa
gaagagccaaagagtgtaacgataaagcagtctaacatcaatgtatctaatgtcgtcagc
ctgtgtaataaactcaggggcttctcccacataacccttttagatttgtccaaaaactca
cttggtaacaagggcctaaagaagattctggatcttctgcctaaacttggaatgattcag
gagatcaaagttggagaaaatggtgttgatatggatggagtggtgatgcttgcttctgcc
ctctgtaaccagaagaacctgaagagagtggatgcaagtgaaaatggaaagaaacagttg
gctctttggtttgacaccagcagacgacataattcaagacagctggctccaaatgtaacc
cgggtacatttgcataaaaaactcagtttaacccacagtgatatcaaacctgtctacatg
accaagctgtgtaagcaactggtaaaatgtgaaaacctactggacattgagttctcccat
ctaaaattatcaaatgagtctgtcgagaagttgatgctgattcttcctgaaatgtcttct
cttcagctactgaatttaagtcatgttgacctgtctacaaatggggctttgttattggtc
agatctcttgctgactgccagcgtgtcacggctgtagaactgaggcaccaggcagaagca
ttcatcaagtttgttcctgaaaaagcagaggcagcaatttgcaagctcacagagtataaa
ctgtgcaaaagcagtgttgagaagctctcaaagatactggagaactgtcctcgcttatct
gaattggatttgtctcataaccttctccgtgatgatggggtgaaatgttttgttgactat
ttgcccaaactaaagatctccagctcagtgagcctcaccggcaaccgaataactcaaata
ggggcactacatttggtcaactcaatgaacacctgtgagaaggttgttgctgttgaagtc
agtcttggagtggaagatcagtctctgattaagtttgtgcaggagcatgtcaatggcaaa
actcttaggctaagggattgcagttttgaggtcatacatttgaagaagcttgtggaaata
ctgaacagatgccctaggctacttacattagaattgtcctctaattcactgcaaagtcaa
ggccttttactggacagcctggttgagctctccacaatccaaactgtcaaactaggaaac
aattgtctgagttctgagcagattgagtattttgttaaacaatttggcagctgtcaccaa
cccagagacatcaggattgaagagccgtggctgacaggaagtgctgtcgtcagtcttgtt
gccaaatgcttaactctgcagccacacatcaaagaaatcagggtcagacgtgcatccata
aacatcattacagagggcaattccggtctcagctccacttttgtagctcattctgaaaaa
ttctcacctgctttgcagtccatcagctttgatgactgtgacatagaaggacagcatctc
gctgctctgacacttcccattcagaaatgtaatgccttacaggatttaaggttttcccag
ctcaaagtggacagaaaatgtgcagattttttttctgctgtaattccatttttgcagaat
ctcaggaacctcactcttgatttgaaaggagcagctgaggatgaggtggaaacacttgct
gaagcattaccagacactacaacatttgagagtctgggtttgtcccagcttgttttaagt
gaccgtggtgctgcagtacttggcagagcacttcaaagtgtgccaaatctagagctgatc
aatctgtctcagtgctctggttggacagaagctagaggacgtgacctggtcagaggtctg
atgcagtgcctctcgctggcagagatacgactggactctgtggtgctcgatgaggagggt
gtaaccatcctagctcaaggcttcagccgtttgacctcacttaggaggctcagcttgaac
aacattagagtggtgacatcagagacatttgtgaatggcactggcatactctgtcttctg
gcctcttttaagagttttagacagatggaagagattgagttggaaagctggcgaatggga
gacagtggtattcatgagcttgtgaaatgcattccttcatggactgaactagtaaaacta
agtctgtctgacaacaatgtgactgaccaggcaggagagaagctactgatggcactatct
cactgcagacttcttcagaaactacagctgtccaaaaaccagcttggcctgtccagtgct
gctaaactagctcaagtccttccgttgctgccccaactttcagaactcaatttgtcagag
aatcagcttggcccacaaggatccttggctctttgtgatggtctgatgagcatgaaggca
ctaaaaatactacatttgacatcgattgggagttcagatctggttggtgtggcctcatcc
ctcaaaaactgtccatccatagaggacatcagcttgtcatggaatggatgcagtgacagc
ctggcacagacactggctgagattctacccttatgtacaaagctgagaagacttgacctg
gaggccaataatataagcacagcaggagccacagtgatagccaaatgcctcccattatgc
cccttcattgaagtaataagactctggaggaacccaattgccaaagatgatgagaatctg
aaagatcaaagactgaatttttcatcagtttaa
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