Labeo rohita (rohu): 127180903
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Entry
127180903 CDS
T09007
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127180903 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127180903 (ddx6)
03036 Chromosome and associated proteins [BR:
lroh03036
]
127180903 (ddx6)
Enzymes [BR:
lroh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127180903 (ddx6)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127180903 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
127180903 (ddx6)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Gene silencing
piRNA pathway
127180903 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
SNF2-rel_dom
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
127180903
NCBI-ProteinID:
XP_050991254
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All DBs
Position
18:30249323..30261912
Genome browser
AA seq
484 aa
AA seq
DB search
MSTARMENPVILGLSNQNGQMRGSVKPAGGPGGGGGGSQTTQPAQVKPSSTVNNGNSQPA
PTANTIIKPGDDWKKNLKLPPKDLRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKP
SPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDSIQALVIVPTRELALQ
VSQICIQVSKHMGGVKVMATTGGTNLRDDILRLDETVHVVIATPGRILDLIKKGVAKVNQ
VQMIVLDEADKLLSQDFVQMMEEILSSLPKQRQILLYSATFPLSVQKFMNTHLQKPYEIN
LMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGY
SCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYL
HRIGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPSSIDKSLYVAEYHSESGE
EVKL
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagccagaatggagaatccagtgattctgggactgtcgaatcaaaatggccaa
atgcgaggctcggtgaagccagcgggtggtcctggaggaggtggaggtgggtcccaaaca
acgcagccagcccaggtcaaaccctccagcacagtcaacaatggcaactcccagcctgca
ccaacagccaacactattatcaagcctggggatgactggaagaagaatctaaagcttcct
ccaaaggatttgcgcatgaaaacttcagacgtgacggcgaccaagggaaacgagtttgag
gattactgcctgaaacgggagctgcttatgggcatctttgaaatgggctgggagaaaccg
tcacctatacaggaggagagcattcccattgcgttgtctgggagggacattctggccaga
gccaagaacggcacaggaaaaagtggcgcctacctcattcccttacttgaacgcattgac
ctgaagaaagacagcatacaagcgttggttattgtgcccactagagaactggctctacaa
gtgagccagatatgtatccaggtcagcaaacacatgggcggggttaaggtcatggcaact
acaggtggaaccaatctccgtgatgacatcttgagacttgacgaaacagtgcatgttgtc
attgccactccaggaagaattttagacctcatcaaaaagggagtggccaaagtcaatcaa
gtacagatgatcgtgttggatgaggcagataagctcctgtcacaggactttgtacagatg
atggaggagattctgagctctttgcccaaacaaaggcaaattttgctgtactctgccacc
ttcccactgagtgtgcagaagttcatgaacacccatctgcaaaagccctatgagataaac
ctgatggaggagctgaccctgaagggtgttactcagtattacgcctatgtcactgaaagg
cagaaagtccattgccttaatactctgttctccaggctccagatcaatcagtctataatc
ttctgcaattcatcacagcgagtggagctcctggcaaagaagatctctcagcttggatac
tcctgtttctacattcacgccaagatgagacaggaacacagaaaccgcgtgttccatgat
ttcagaaatggcttatgtcgaaatcttgtctgcactgatctcttcacaagaggaattgat
atacaagctgtgaatgtggtgatcaactttgatttccccaaacttggggagacgtacctc
catcgcattggcagatctggccgatttggacacttgggtctcgccattaacttgatcacc
tatgatgaccgctttaacctgaaaggtattgaagaacagctgggtactgaaatcaagcct
attcccagcagtattgacaagagtctatatgtggccgagtaccacagtgagagcggagag
gaggttaaactgtga
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