Labeo rohita (rohu): 127180920
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Entry
127180920 CDS
T09007
Name
(RefSeq) VPS10 domain-containing receptor SorCS1 isoform X1
KO
K27081
VPS10 domain-containing receptor SorCS1
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127180920
Membrane trafficking [BR:
lroh04131
]
Protein recycling
Others
Others
127180920
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
GBP_PSP
Motif
Other DBs
NCBI-GeneID:
127180920
NCBI-ProteinID:
XP_050991315
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Position
1:18177820..18382126
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AA seq
1240 aa
AA seq
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MERGIRYCRVNAFCTLLLVLFARVPVTKTVITCRSCHLLDKWSGRELLVRMDNGVDFDKV
SDKNGDGSTALFNSAGAETVQPDCGATDNCEHAHSVRKRNTERLRSEKMPPDDKWKSMRS
HGKVYNLKRPGSQGSAPGEPHHRVRRSTQGPGSPPGARSPPAFGNSTARAARRVPRSDLR
WNREERRTATSRQEELKLTSSTFALTGDSAHNQAMVHWSGQNSSVILMLTKLYDFNLGSV
TESSLWRSTDYGTTYEKLNEKVGVKTILSYLYVSPNNKRKIMLLTDPEVESSLLISSDEG
ATYQKYRLNFYILSLLFHPEQEDWILAYGHDQKLYSSVEFGRRWQLIHERVAPNRFYWSK
LGLDKEPGLIHLETSISETQALYVTCKLQNCTDANKGKPFPGYIDPNSLVVQDEYVFVQV
STGGRPIYYVSSRRDVFTPMKLPKYTLPKDLHVISTDENRVVAAVQEWNQNDTYNLYVSE
AGGIYYTLALENVMSSMGPEGNVMIDLYEVAGIKGMFLANKKLNNEVKTYITYNKGRDWR
LLQAPSADLRGNRIHCMLPYCSLHLHLHVSANPYTSGNIASRESAPGIIVASGSIGAELT
SSNVSMLITSDAGNTWRQIFDEEYSVLYLDQGGALVAIRHTPLPIRHLWLSFDEGRVWNK
YSFTSSPLFVDGVLGEPGEETLIMTIFGHVSHRSEWQLVKIDFRSIFNRRCIESDYVPWD
LHDQGERCLMGVKRVYRKLKPIARCVMGKTYSVTMISEPCDCTESDFECDYGFERRADGK
CTPAFWFLPSSMSRTCTTEHTFLNSTGYRKVVSNNCTGGVIEQYTARRQLCPSQAPRGLH
LVTSEGKLTATLASNVTFLVFLEEGDGSKTSITVDFGDGNAFTYSNVSSIEDGIKHIYKN
VGIYRVSATAENSLGSETVLLFLHITCQLESIHLSAPFVAVKNKEVNLTVVLSPSQVGTV
TYIWWLGNNSEPVITLEGSVAFTFSREGISVVTVQVSAGNTILQDRKTIAVHEYFRSHLL
AFSSNLDDHNPDVAEWRLDVSRVIKTSMVQATGVNPEQLLVTVLPGLPTAAEFFLLPDKQ
LTEGKPDKTATHLDELSELVLSALNQNLVQFTLRPGVQITVYAAHLSAAPLVDTSENHSG
SAMLMLLSVVVVGLAVFLIYKFKRKIPGLHVYAAMQDEKEQEMIQSPVSPTDSTPSCSSQ
RELLTSLEPLDTEPNTQTIECIKPHPRVKFSSDLPTYIDV
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atggagagaggaatcagatattgccgggttaatgctttctgcaccctgcttttggttttg
ttcgctcgggttccggtgaccaaaacagtgataacttgcaggtcatgtcacctgctggat
aagtggagcggtcgggaattactggtgaggatggacaatggtgtcgattttgataaagtt
agtgacaaaaatggagatgggtcaacggcgctgtttaattcggctggtgctgaaactgtt
caacccgactgcggcgcaaccgacaactgcgaacacgctcactccgtgcgtaaaaggaat
acagaaaggctccgctcagagaaaatgccacccgatgataaatggaagtcgatgcgcagt
catggcaaagtttataacctcaaacgtccaggttcacaaggttcagcccctggagagccc
catcaccgagtgcgtagaagcacccaaggacccggctcccccccaggtgcgcgctcgccg
ccggcttttggcaacagcaccgcgcgggctgcgcgcagagtcccccgctctgatttgaga
tggaacagggaagagcggagaacggccacatcgcgacaggaggagctgaaacttaccagc
tctacctttgcgctgacaggggattccgctcataaccaagccatggtgcactggtccggc
caaaacagcagcgtgattctcatgctgaccaaactgtatgacttcaatctgggcagtgtc
acagaaagctccttatggaggtcaacagattacggaaccacttatgagaaactcaatgaa
aaggtgggagtaaagaccatcctcagctatctatacgtcagccccaacaacaagcgcaag
atcatgctgctgacagatccagaggtggagagcagtttgctcatcagctcagatgaaggc
gccacctatcaaaaatatcgcctcaacttctacattctcagcttgctgtttcaccctgag
caggaggactggatccttgcctacggccatgaccagaagctctacagctctgttgagttt
ggccgtcgatggcagctcattcacgagcgggtggcgcccaatcgattctactggtctaaa
ctgggtcttgataaagagccaggcctgattcaccttgagaccagcatctcagaaacccag
gctctttatgtcacatgtaagcttcagaactgtacagatgccaacaagggcaaacctttt
cctggctacattgaccccaactcactggtggtccaagatgagtatgtctttgtccaggtg
tcaaccggtggtcgtccaatctactacgtgtcatccaggcgagatgtgtttacacccatg
aagcttcccaaatacacccttccaaaggatctgcatgtgatcagtacagatgagaaccgg
gtcgtggcggcggttcaagagtggaaccagaatgacacttacaacctgtacgtgtcagag
gccggaggcatttactacacgctggctttggaaaacgtcatgagcagtatgggaccagag
ggaaatgtcatgatagatctatatgaggtggctggaataaaaggcatgttcttggccaat
aagaagctaaataatgaggtgaagacatacataacctataacaaaggccgcgactggagg
ctcctgcaggcaccctcggctgatctcagaggaaataggatccactgcatgctgccgtac
tgctctctccatcttcacctgcacgtatctgcaaacccgtacacatccggaaatatcgcc
agcagagagtcggcccctggaatcatagtggcgtcaggttcaatcggtgcagagttaacg
agcagcaacgttagcatgctcatcacatccgacgctggaaacacgtggcggcagatattt
gacgaagagtacagcgtgctgtatctggatcaaggcggagctttagtggcaattagacac
acccctcttcccatcaggcacctctggttgagctttgatgaagggagagtgtggaacaaa
tatagtttcacttcatcacccctgttcgtggacggggtcttgggcgaaccgggcgaggaa
acgcttataatgacgatcttcggtcatgtcagtcaccgctcagaatggcagctggtaaag
atagacttcaggtctatctttaacagaagatgcatcgagtctgactatgtgccatgggat
ttgcatgaccagggtgaacgctgcctcatgggagtcaaacgagtctatcgaaagctgaaa
cctatagcaaggtgtgttatgggaaaaacctactctgtcacgatgatttccgagccatgt
gactgcactgagtcggactttgagtgtgattatggctttgagaggagggctgatgggaaa
tgtactccggcattttggttcctcccctcctccatgtctcggacctgtactacagaacac
acattcctcaacagcactgggtacagaaaggtggtgtctaacaactgcactggtggggtg
attgagcagtatacggctcgtagacagctgtgcccaagccaggctcctcgtggcctgcac
ttagtgaccagcgaagggaagctaacagctactcttgccagcaacgtcaccttcctcgtc
ttcctggaggagggtgatggatcgaaaaccagcatcacagtagatttcggcgacggaaac
gctttcacctactccaacgtgagctctatcgaggatggcattaaacacatctacaagaac
gtgggaatctaccgggtgtcagccacagcggagaacagtctgggctctgaaacagtgctc
ctcttcctacacattacgtgtcagctggagtctattcacctctccgccccgtttgtcgct
gtgaaaaataaagaagtcaatctgacggtggttctctcaccaagccaagtgggaacggtc
acatatatctggtggcttgggaacaattctgagcccgtgatcacgctggaggggagtgtg
gcgttcacattctctcgagagggaatcagcgttgtcactgtacaggtgtccgctgggaat
accatcctgcaagacaggaaaaccatcgctgtccatgaatacttcagatctcatcttctt
gccttttcatctaatcttgatgatcacaaccctgatgtggctgaatggaggcttgatgtg
agtcgagtcattaaaacctctatggtgcaggcgacaggagtgaatccagagcagctgttg
gtcacagtgttgcctggactgccaacagcggccgagttcttcctgttaccagacaaacag
ctgacagaggggaaaccagacaaaacagccacccatttagacgagctctcagaactggtt
ctcagcgctctgaatcagaatctggttcagttcacactcagaccaggagtccagatcaca
gtatacgctgcacatttatcagcagcgcctctagtggacacaagtgagaatcacagcggc
tcagcaatgctcatgctcctctctgtggtggtggtgggtttagccgtgttcctcatctat
aaattcaaaaggaagatcccaggcctccacgtctatgcagcgatgcaggacgaaaaagag
caagaaatgatccagagtccagtttctcccactgacagcacacccagctgcagctctcag
agagagctgctcacatcactggagcctctggacacagagcccaacacccagaccatcgaa
tgcatcaaacctcatccacgtgtcaaattctcatcagatcttcctacatacatcgacgtt
tga
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