Labeo rohita (rohu): 127181083
Help
Entry
127181083 CDS
T09007
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127181083 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127181083 (edc4)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127181083 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
127181083 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
Beta-prop_HPS5
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_Prp19
Pdc1_Ge1
Beta-prop_EDC4L
WDR55
EIF3I
DUF4575
Uteroglobin
Motif
Other DBs
NCBI-GeneID:
127181083
NCBI-ProteinID:
XP_050991545
LinkDB
All DBs
Position
18:complement(13776245..13810052)
Genome browser
AA seq
1431 aa
AA seq
DB search
MASSSNMDIEGATQHLRDILKLDRPGNSAEPSLVESQRKPSFNGELNGVLGADLIGAGGL
AAVVEPTTHNTDKLNGQDTQTICLSGDDGSTCVPIRANNVEIVSSRDSSIDSKARGSNKV
KIQPVAKYDWEHKYYYGNLIAVSNSYLAYAIRGANNHSMIRVLRLGSTERSLLKGFTGAV
TDLAFAHLDSTLLGCVDEAGNMFIWQLTSHSSKIQDEVIVHIRRPEDTPLNSNRRLIWCP
FIPEDNDENPEDPCQTLALLHEDRAEVWDLDILRSNNSSWPVDATELKEGFITIRGHTAR
ISEGALSPDGTVLATASHDGYVKFWQIYIEGQDQPRCLHEWQPHNGRPLSCLLFCDNHKK
QDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSGVLPSLKASLDLSAEF
LILSDVQRKVLYVMELLQDQEKGRASFTAVSEFLLTHPVLSFGVQDVARARLRHTEVLPP
DEESESMTTEGNQGPSESKSGIQIKLYCVHTKSLQDVQIWFQPNQGASSSLFMPQSGSQD
GFGFSDPLADLNVEAMSSDKESGDSGSQNDLSKILALPTPADFMSPAPSALPKLMTPDAF
MTPSTSMPASPGSSASSLTIVTAMSSSDSGARGGDDLAQSPKVSAECGNSSLNLSASAGS
PRSNSILISGLGENIQAFSPPLVLSPSLLHEASLLCEAAPYSHRLPLPYFPSPPPQVSPP
NPPLSLDLQAIDPMVVPQASPTRARSPDVISSASTAMSQDIPEIASETLQRGLVGAAADS
VPVQHSDSMASAASVLHLLSPRTRSSAEHSLLPLELGAASVDGEQRLNNTPSLLETALSQ
ENAVAAGGSCSDSSVNHTWPAAPDITRETRNSLRDNGLGDCSREEIKDRHISSPYHRRTY
HLTQNDSQDASAEQSDHDDEVASLASSSGNCGPRSSHRLPVKDWKTSPRSSPKLKRKSKK
DEGESSQSRQIESQMSTEVQDELLLMLRSQQREIAELRQNQLELLQRVTSHMDAVQSSIM
AHIEHAMLAQQEQEQRRMERILAEGQSRNQQLQDQLVQQLVQTLNNSLCNRLDKVLREEM
KKTVPQAISKSLEPVTGQMSSTIAAKLTAVEGTLKENVTKVVKSKNTTDAIGRAAAEAMQ
GPIQAAYKETFQSIVLPVFERGCQSMFQQINDSFKQGTHEYIQQLETHIKNRKQRDQDAR
DPVIGQLQQMIDTLQNSQDQLATTVTASVCSDVQHQLHMIVGNLQDSILTQVQRIVKGEV
SLAMKEQQAAVTSSIMQAMRSAAGTPVPSAHLDYQAQQASILQLLQQGQLNEAFQQALSA
ADLNLVLYVCETIDSQQVFGQQSCPLHQAVLLSLIQQLSTNLSTRTELKISYLEDAVMNL
DHGDPVTRDHMSAVLTQVRQKLLHFLQQDAHSPLSKRARRLMMMLQGLVNH
NT seq
4296 nt
NT seq
+upstream
nt +downstream
nt
atggcttccagttccaacatggacatagagggcgcgacccagcaccttcgggatatctta
aaactggatcgtcccggtaattcggccgagccctctttggtagagagccagagaaaacca
tctttcaatggagagttgaatggcgttcttggagccgatcttatcggagcaggaggactt
gctgcagtggtggagccaacgactcataacacagacaaacttaacggacaggacacacag
accatttgcctttcaggagacgacgggtccacctgtgtccccatcagagcaaacaatgtg
gaaattgtgtccagtcgtgactctagtattgacagtaaggctcgtggcagcaacaaggtt
aaaattcagccagtggccaaatatgactgggagcacaaatactactatggcaacttaata
gctgtgtccaactcatacttggcttatgctatcagaggggcaaacaatcattctatgatc
cgagtgctgaggctgggctcgacggagcgttcgctgctgaagggcttcaccggtgcagtc
acagaccttgcttttgcccacttggactccaccctgttgggctgcgtcgatgaggctggg
aacatgttcatttggcagctcactagccacagcagcaaaatacaagatgaagtgatcgtt
cacatccgaaggcctgaggacacgccactaaattccaaccgcagactcatctggtgtccc
ttcatcccggaggacaatgatgagaacccggaggatccgtgtcagacgttggcgctcctt
catgaagacagagctgaggtttgggaccttgacatcctccgatccaataacagctcatgg
cctgtggatgccactgaactgaaagagggtttcatcaccattagaggacacacggcacgc
attagcgagggagcgctgtcccctgatggcactgtcttggccacagccagtcatgatgga
tatgtgaagttttggcaaatctatattgaaggacaggaccaacccagatgcctgcatgaa
tggcagccacataatggacggcctctttcctgcctgctcttttgtgacaaccacaaaaag
caagacccagaagttcctttctggcgctttctgatcactggagctgatcaaaaccaggag
ctgaagatgtggtgcactgtgtcatggacgtgcttacaaaccatcaggttttctccagat
ccattcaacagcggtgtgttacccagcttgaaggccagtttggacctgtctgcagaattt
ctcattctcagtgatgttcagagaaaggtgttgtacgtcatggagctgctacaggatcag
gaaaaaggccgtgccagcttcactgcagtttcagaatttctgcttacgcaccctgtgctc
agcttcggcgtacaggatgttgcccgcgcccgattgcgccacactgaggtccttccccct
gatgaggaaagcgaaagcatgacgacagaaggaaaccagggaccttcggagtccaaatca
ggaatccagattaaactctactgtgtgcatacaaaatcactacaggatgtgcaaatctgg
ttccagcccaatcagggggcctcatcttccctcttcatgcctcagtctggatcacaggat
ggctttggtttttctgacccactggctgatctgaatgtggaggctatgagctctgataag
gagtctggcgatagtggatcacagaatgacctgagtaagattctggctcttccaactccg
gctgacttcatgagtccagccccatcagccttgcccaaactcatgaccccagatgcattc
atgacgcccagcacctccatgcccgcttcccctggcagcagtgcaagcagcctgaccata
gtcacggccatgagcagctcagatagcggagcaagaggtggagatgatctggcccagagc
cctaaagtgtctgccgaatgtggcaacagcagcttaaatctgagtgccagtgcaggcagt
ccaagatccaactctatactcatctcaggccttggggaaaacatccaggctttctctccc
ccgctggtgctctctccatccctccttcatgaggcctctctgctctgtgaagctgctcct
tattctcacagacttccccttccttatttcccttctcctcctccacaggtttcccctcca
aacccccctctctccctggatctccaggccatagaccccatggttgtcccccaggcctct
ccaaccagagctcgctctccggatgtaatctcctccgcttctacggcaatgtcccaggac
attcccgagatcgcctctgagaccctccagagggggctggtgggtgccgctgctgactcg
gtccctgtccagcattctgacagcatggcatcggccgcgtcagtcctccacctgttgtct
cctagaacccggagcagtgctgaacacagtttgctacctctcgaattgggtgcagcatct
gtggatggagaacagagactcaataacacaccgtccctgctagagacagctctgtcgcag
gagaacgcagtagcagctggaggatcctgttctgacagtagtgtgaaccacacctggcca
gcagcacctgatatcacacgagaaactcgcaacagcctgagagacaatggtttgggagac
tgctctagggaggaaataaaggacagacatatttcttccccctaccacaggcgcacatat
cacctgactcagaacgacagtcaagatgcaagtgcagaacagagtgatcacgatgatgaa
gttgccagtctggcctcctcctcggggaactgtggccctcgctcctctcacagacttcct
gtaaaagactggaaaacatctccccgcagctcccctaagcttaagaggaagagcaagaag
gatgaaggagagtcctcgcagtctagacagattgagagccagatgagcactgaggtgcag
gatgagctcctgctgatgttacggagccagcaaagggagattgctgagctgagacagaac
cagctggaacttttgcagagagtcaccagccacatggatgctgtacagagctccatcatg
gctcacattgagcatgccatgttggctcagcaggagcaagaacagagaagaatggagcga
attttggctgaaggacaaagccggaaccaacagctccaggaccagctggttcagcagctc
gtccagactctaaacaacagtctctgcaaccggctagacaaagttttgcgtgaagaaatg
aagaagaccgtcccacaggccatatcgaagagcctcgaacctgtgaccggccagatgagc
agtaccattgctgccaagttaaccgcagtggaaggaaccctgaaggaaaatgtcaccaaa
gttgttaaatccaagaacactacggatgctatcggtcgtgctgctgcggaggccatgcag
ggtcccatccaggcggcttacaaagagaccttccagagcatcgtactgcccgtgtttgag
agaggctgccagtccatgtttcagcaaatcaatgacagcttcaaacagggaacccatgag
tacatccaacagctggagacgcatatcaaaaacaggaaacagcgggaccaggatgcacgg
gatcccgtgattggccagctgcagcagatgattgacacgctccagaattctcaagaccag
ctggccacaactgtgactgccagcgtgtgctctgacgttcagcatcagctccacatgatc
gtgggaaatctgcaggactctatcctgacgcaggtgcagcgtatagtgaagggagaggtg
agtctggccatgaaggagcagcaggcagctgtcacctccagcatcatgcaggccatgcgc
tcggccgcaggaacaccggtaccctccgcacatctggactaccaggcccagcaggccagc
atactgcagttactacagcagggccagctaaatgaggctttccaacaggctttatccgca
gcagacttgaatctggtgctgtacgtgtgcgagaccattgactcccagcaagtgttcggc
cagcagtcctgtccactccatcaggctgtccttttgtctctcatccagcagctctccacc
aacctgagcacacgcacagaactcaagataagctatcttgaagatgctgtaatgaacctg
gaccatggcgatccagtcaccagagaccacatgtctgcagtcctgacccaggtacgacag
aagctcttacacttcctccagcaggacgcccacagccctctgagcaagcgcgcacgccgc
ctcatgatgatgctgcagggcctggtcaaccactag
DBGET
integrated database retrieval system
