Labeo rohita (rohu): 127181232
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Entry
127181232 CDS
T09007
Symbol
zc3h18
Name
(RefSeq) zinc finger CCCH domain-containing protein 18 isoform X1
KO
K13092
nuclear protein NHN1
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lroh03041
]
127181232 (zc3h18)
Spliceosome [BR:
lroh03041
]
Common components
Common spliceosomal components
General mRNP proteins
127181232 (zc3h18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH_4
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
127181232
NCBI-ProteinID:
XP_050991836
LinkDB
All DBs
Position
18:complement(10833224..10869814)
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AA seq
1154 aa
AA seq
DB search
MDTPESPTQSPQSPEEEEKGLSDNELLESPESPADVDKGVSDSELLNDDENDVQERGGDS
DFEDGDRVAARGEDPEEVSDLDDYKMDREEREDVHQPDLGLMSRGSRQNPSQSPEEEILE
TPRSPDPDSPGPEHERPFTPVEEERDEEDETTTKSGLGRAELEEEDDEEEERRRRRRAAM
VVSDLKDESSVSRDLDEHELDYDEEVPEEPSAAAPEEDEAEKGPAGEDGEDEEEDDEEEE
KRRKKKERKPILPPDKDTPLRRSEDSREGGRRDSFRDRKKEEDDGEIDEGEIDDDDLEEG
EVKDPMDRKIRPRPICRFFMKGNCTWGMICRFIHPGVNDKGNYSLISKPDPFSPNGAPPG
GAGSGGPHPLMPANPWGAPAVEELPPPPPPLDPPVESAWERGLRHAKEVLKKATIRKEQE
PDFEEKRFTVTIGEDDRDFDKENDFFRERGYRITREIRDAGDIEFRDPGYGDPYGDPYYD
YEMEAFWRGGQYENFRVQYTETPLPYYPDRERERDPRERHRERERERERDHRERERRQRE
REREREREREKESRRRKEEWERDRLKRDEKEGRPRERPPREPREKKDDKEKPLKPRSPTN
MPPRGPMEPPPKKEMVPLPKRPDEWKDPWRRSKSPRRRPGLMGSPPRGRRRHRPSGSSVS
LSNSSRSSSRSSSFTGSGSSRSRSRSRSSSMSSYSSHSSQHSSFSGSRSRSRSFSSSLSP
TPSAQRNTNKNKAEQPPGALKGPPLKPGALPPPRREKGPPKMMPSPSLPEQPGKPPKPIP
EAGKPPNPRPAGRPPGPREPREPREPREPREPREPREPREPREPREPPNMREGRKKERQQ
NNPPRRRTVSGSVSGSSYSGSSSRSRSHSSSASLSRSRSGSHKSRSLSVSSVSSVSSASS
SSSSVRSADSDDMYADLASPVSSASSRSPTPGHARKERGPPRDRGPNKERGKPPKKDEPF
KDERKRVDPSGLPPKTGSGMPRSGNRGHPMHPPPMGPPGGYGSHKDIKLTLLNKQQTDRG
NRKRYFPADKERPPSPLNKRMALSPDRGRDRRIPGRPPLSPRMERPKGQGPRPMPPQGER
KRPLSPPPKSSGKAPAAVSAGKPPAPGAGSGSGSASSSGSGKPSSTLSRREELLKQLKAV
EDAIARKRAKIPGK
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atggatacgcctgagagccccacccagtccccacaatctcctgaggaagaggagaagggt
ctctccgacaatgagctactggagtcgcccgagtccccagcggatgtagacaagggagtt
tcggacagtgagcttttgaatgatgatgaaaatgacgtacaggagcgtggcggagactca
gactttgaggatggagacagggtagcagctagaggcgaagatcctgaggaggtatcagac
ctggatgactacaagatggacagggaggagagagaagacgtccaccaaccagacctcggt
ttgatgtcccgaggaagcagacagaaccctagccagtctccagaggaggaaatccttgag
acaccgagatcacctgatcctgactcgccggggccagaacacgagcgacctttcacccca
gtggaagaggagcgagatgaggaggatgagacgaccaccaaatctggtcttggccgtgct
gagcttgaggaagaggatgatgaggaagaagaaaggaggaggagaaggagggcggcgatg
gtagtgagcgatttgaaggacgaatcttccgtgtctagagatctggatgaacatgagctg
gattatgacgaggaggttccagaagagccgagtgctgctgctcctgaggaggacgaggca
gagaagggtcccgctggggaggatggagaagatgaggaagaggatgatgaagaggaggag
aaaagacggaagaaaaaggaaagaaaaccaattctgcctcccgataaagatacgccgctg
agaagatctgaagattcaagagagggaggcaggagagattcgttccgtgatagaaagaaa
gaagaagacgatggagagattgatgagggagagatagatgatgatgatcttgaagagggg
gaggtgaaggaccccatggaccggaagatcagaccccgacccatctgcaggtttttcatg
aaaggtaactgcacatggggcatgatctgtaggttcatccatccaggagtcaatgataaa
ggcaactactccctcatctccaagccagatcccttctctcctaacggagcacctcctgga
ggagcaggaagtggtggacctcaccccctcatgcctgctaacccctggggagcccctgcc
gtagaagaattgcctccccctccaccgcctctagatccaccagtggagagcgcctgggaa
agaggccttagacatgccaaagaggtgttgaagaaagccaccatccgtaaagagcaggaa
cctgattttgaggaaaagcgttttaccgtaaccataggtgaagatgacagagactttgac
aaagaaaatgacttcttcagggaacgcggatatcgtatcaccagagaaatcagagatgcg
ggtgatattgagttcagagatccaggttatggtgatccatatggcgacccatactatgat
tatgagatggaagctttttggcgaggaggccagtatgagaatttcagagtgcagtacaca
gagaccccactgccgtactaccctgaccgagagcgggaacgagatccacgcgagcgccat
cgcgagagggaacgggagcgtgagagagaccaccgtgagcgagagcgcaggcagagagag
cgagaaagggagagagaacgagaacgggagaaggaaagccggcgcaggaaggaggaatgg
gagagggatcgtctcaaacgggacgaaaaggagggaagacctagagagcggcctcccaga
gagccacgggagaagaaagatgataaggagaagccactcaaaccacgttcgcccacgaac
atgccacccagagggccaatggagccaccaccaaagaaggagatggtcccgttgcccaag
aggccagatgaatggaaagacccctggcgcaggtctaaatcccctaggagaagacccggt
ctcatgggctcccctccacgtggccgtagacgacacaggccctctggatcttcagtttct
ctttccaattcatctaggtcttcatcccgatcttcgtcgttcacgggttctggctcttcc
cgttcccgttctcgctcacggtcttcttcgatgagttcctactcaagtcactcgtctcag
cacagctctttcagcggaagccgctctagatcacgatccttctcttcctcactctccccg
accccctcggcacaaagaaacactaataagaacaaagctgagcagcctcccggtgcattg
aaaggccccccattgaagcctggtgcactgccccctcctcgcagggagaaaggaccccct
aaaatgatgcccagtccctcattacctgaacagccaggtaaaccacccaagccaatccct
gaggcgggaaagccccccaacccccgtccagctggaagacctcctggacccagagagcca
agagagccaagagagcccagagagcccagagagcctagagaacccagagagcccagagag
ccgagagagccgagagaaccacccaacatgagagaaggacgcaagaaagaacgtcaacag
aacaacccacctcgcaggcgaacagtgagtggcagtgtaagtggcagcagttattctggc
tccagctcacgctcaagatcccattcctcctccgcctcgctctcccggtcccgttccggg
tcccacaagtctaggtctctgtcggtcagtagcgtgtcgtctgtctcatccgcctcctcc
agcagtagctcagtcaggagcgccgactctgatgacatgtacgctgacctggccagccct
gtgtcctcggccagctccagatcacccacaccaggccatgcccgcaaggaaaggggccct
ccacgagacaggggccccaacaaagaaagaggaaaaccaccaaagaaagacgagcctttc
aaagatgagcgaaagcgagtggacccctccggtctcccccccaagaccggctctggcatg
cctagatccgggaaccgaggtcaccccatgcacccgcctcctatgggtcctccaggagga
tacggctctcacaaggacattaaactcaccctgctcaacaagcagcaaaccgacaggggc
aataggaaaaggtactttcctgccgataaagagcgacccccttcgcctctcaataagagg
atggcgctttcgcctgacagaggtcgtgacaggaggatccccggtcgccccccgctgtct
cctagaatggagcggcccaaaggccagggtcctcgacccatgccaccacaaggagaaagg
aagcgtcctttatctccaccacccaaatcttctgggaaagctcctgctgctgtgtctgca
ggtaaaccacctgctcccggggctggatccggttccggctccgcttccagttcgggctcg
ggcaagccgagcagcactctttctcgccgcgaggagctgctgaaacaattaaaggctgtt
gaagacgccatagcccgcaaaagggccaaaatccctgggaaataa
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