Labeo rohita (rohu): 127181629
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Entry
127181629 CDS
T09007
Symbol
thbs3b
Name
(RefSeq) thrombospondin-3b
KO
K04659
thrombospondin 2/3/4/5
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04145
Phagosome
lroh04510
Focal adhesion
lroh04512
ECM-receptor interaction
lroh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127181629 (thbs3b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
127181629 (thbs3b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
127181629 (thbs3b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
127181629 (thbs3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127181629 (thbs3b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lroh04147
]
127181629 (thbs3b)
00536 Glycosaminoglycan binding proteins [BR:
lroh00536
]
127181629 (thbs3b)
Membrane trafficking [BR:
lroh04131
]
Endocytosis
Phagocytosis
Opsonins
127181629 (thbs3b)
Exosome [BR:
lroh04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
127181629 (thbs3b)
Exosomal proteins of colorectal cancer cells
127181629 (thbs3b)
Exosomal proteins of bladder cancer cells
127181629 (thbs3b)
Glycosaminoglycan binding proteins [BR:
lroh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127181629 (thbs3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
EGF_3
cEGF
EGF
EGF_MSP1_1
Motif
Other DBs
NCBI-GeneID:
127181629
NCBI-ProteinID:
XP_050992403
LinkDB
All DBs
Position
19:6155376..6173067
Genome browser
AA seq
954 aa
AA seq
DB search
MEFRKIVPNLLVLYVAFGHFSESSEFKVINILELSDAHQTVAAIENLSGALQTIGDLYIT
STFMLPPKLGGVLFGLYDKEDNKKYLEIAAVGKINKLLVRYLRSDGKAHAVNLQNPVLAE
GRAQSLILRMSGLRRSHINLELYVNCRLVDSAQGLPSFVGLPSKAESVDVRTGQKSYARI
QGSIESVKLALGGSLATAGLLIDCPFQGDSAINNAVGSDAINAILGDHTKALIGQLIIFN
QIMGELREDIREQTKEMSLIRNTILECQVCGFHEPQSRCHPNPCYNGVSCMESMMYPGYQ
CGPCPEGMTGNGTHCQDIDECTAQPCFSPELCVNTATGFSCESCPIGFTGPTLSGVGFDF
AKSHKQECVDIDECAEHSGACVPNSVCINTVGSFKCGQCKSGFVGNQTAGCFARRTCETL
GYNPCDVNAHCVMGRNSDISCMCNIGWAGNGNICGPDSDIDGYPDGPLPCIDNDKHCRAD
NCANTPNSGQEDTDGDGIGDQCDEDADGDGIKNVEDNCRLVPNKDQQNSDTDSYGDACDN
CPNVPNGDQLDTDGNSKGDICDNDIDGDGIPNVLDNCPKIPNPMQTDRDGDGVGDACDSC
PEVNDPMQSDMDNDLVGDVCDTNKDMDGDGYQDTRDNCPEVPNSSQVDSDNDGIGDECDD
DDDNDGIPDILPPGPDNCRLVPNPSQKDTDANGVGDMCETDFDNDKVTDLLDACPESAEV
TMTDFRAFQTVILDPEGDAQIDPNWVVLNKGMEIVQTMNSDPGLAVGYTAFNGVDFEGTI
HVNTATDDDYVGFIFGYQDSSSFYVVMWKQTEQTYWQNLPFKASAQPGLQLKAVKSRTGP
GEYLRNALWHTGDTPGEVTLLWKDPRNVGWKDRTSYRWHLTHRPQVGYIRLRLYEGTALV
ADSGVLIDTTMRGGRLGVFCFSQENVIWSNLGYRCNDSIPDDFMLYQRQMNVRT
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atggagttcaggaaaattgtaccaaatctgcttgtactgtatgttgcgttcggacacttt
tccgaatcgtcggaatttaaagtgattaatatattggagctcagtgatgcacatcagaca
gttgcagctatagagaatctgtctggagctctgcagacgattggagatctgtacatcacc
tccaccttcatgctgccacccaaactcggtggcgttttgttcggtctctatgataaagag
gacaacaagaagtacctggagattgctgctgtaggcaagatcaacaaattactggtgcga
tacttgcgctctgatggaaaagctcatgctgtcaatttacaaaatccagtcctcgctgag
ggacgcgcccaatcacttatactcagaatgagtgggcttagacgcagtcacataaaccta
gagctttatgtaaactgccgtttggtggactctgctcagggcctcccttcatttgtcggg
cttccatcaaaggcagaatctgtggatgttcgcaccggacagaagtcttatgccaggata
cagggctcaatagagtctgttaaactggctctgggaggctctctggctacagctggtctc
ctcattgactgtccattccaaggagattcagctatcaacaatgcagtaggcagtgacgct
attaacgccatccttggtgatcacaccaaagctcttatcgggcaattgatcatctttaac
cagatcatgggagagctgagagaagatatcagagaacagacaaaagagatgtctctcatc
agaaacaccattcttgaatgtcaagtatgtggattccatgagcctcagtcacggtgtcat
cctaacccctgctataatggcgtgagctgcatggagagcatgatgtacccaggatatcag
tgtggcccctgtccagagggcatgactggaaacggaacacactgccaggacattgatgag
tgtactgctcagccctgtttctctcccgagttgtgtgtgaacacagctacaggcttcagc
tgtgagtcctgtccaattggattcactggtccaacactcagtggcgttggttttgacttt
gccaagagccacaagcaggaatgtgttgatattgatgagtgtgctgagcactctggtgct
tgtgtgcccaactcagtctgtataaatacagtgggatcgttcaagtgtggccagtgtaaa
tctgggtttgtgggtaatcagaccgcaggctgttttgcaaggaggacgtgtgaaactctg
ggatataacccatgtgatgtgaatgctcactgtgtgatgggccgcaacagtgacatttcc
tgcatgtgtaacattggctgggcaggtaatgggaacatttgtggtccagactcggacatt
gacggttaccctgatgggcctcttccatgcattgacaatgacaaacactgcagagcggac
aattgtgcaaataccccaaactctgggcaagaggacacagatggagatgggatcggtgat
cagtgtgatgaggatgcagatggagatggaattaaaaatgttgaggacaactgtcgtctg
gtgcccaataaggaccagcagaactctgacacagactcctatggcgatgcttgtgacaac
tgccccaacgttcccaatggagatcagcttgatactgatggcaatagcaagggagacatt
tgtgacaatgacattgatggagatggcatccctaatgtattagataactgtcctaagata
cccaaccccatgcagacagaccgagacggagatggtgtgggtgatgcatgtgacagctgt
cctgaggtcaacgatccaatgcagtcagatatggacaacgatttagtgggagatgtatgt
gatacaaacaaggacatggatggtgatggatatcaggacacacgggataactgccctgaa
gtgcccaacagttctcaggtggactcagataacgatggcatcggggacgagtgtgatgat
gatgatgataacgatgggattccagatatccttcctcccggcccagataactgcagactt
gttcccaaccccagtcaaaaagatactgatgccaatggggttggtgacatgtgtgagaca
gactttgacaacgataaggtgactgacttgttggatgcatgccctgaaagtgcagaagtc
actatgacagatttcagggcatttcagacagtcattctcgatccagaaggagatgctcag
attgaccccaactgggtagtactaaataagggaatggagattgtgcagaccatgaacagt
gaccctggtctggctgtgggttacaccgcatttaatggtgtggactttgagggcacaatc
catgtgaacacggccactgatgatgattacgtgggcttcatcttcggctatcaggactct
tccagcttctatgtggtgatgtggaaacagacagaacagacatattggcaaaatttacct
ttcaaagcatcagctcagcctggactacagcttaaggcagtgaagtctcgtacaggtcct
ggtgagtatctacgaaatgccctgtggcacacaggagacacaccaggggaagttactttg
ctctggaaggacccaagaaacgtgggttggaaggacagaacgtcctatcgctggcacctc
actcaccgcccacaggtgggctacatacgattaagattgtatgaaggcacagccctggtg
gcagattcaggggtcttgatagacaccactatgagaggagggcggctgggcgtcttttgc
ttctctcaggaaaacgtcatatggtctaatcttggctatagatgcaatgattccatccca
gatgactttatgctataccagaggcagatgaatgtgaggacatag
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