Labeo rohita (rohu): 127181701
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Entry
127181701 CDS
T09007
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04510
Focal adhesion
lroh04512
ECM-receptor interaction
lroh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127181701 (col1a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127181701 (col1a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
127181701 (col1a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lroh00536
]
127181701 (col1a2)
Glycosaminoglycan binding proteins [BR:
lroh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127181701 (col1a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
127181701
NCBI-ProteinID:
XP_050992541
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Position
19:17579845..17596211
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AA seq
1144 aa
AA seq
DB search
MGPRGPSGPPGSPGPQGFQGHAGEPGEPGQAGAVGVRGPPGPPGKNGDDGNNGRPGKPGD
RGVPGVQGARGFPGTPGLPGMKGHRGYTGLDGRKGEPGAAGLKGENGAAGSNGTPGQRGG
RGLPGERGRVGPSGPAGARGADGNTGPAGPAGPLGAAGPPGFPGAPGPKGEIGPAGATGP
SGPQGQRGEPGPNGAVGPVGPPGNPGANGINGAKGAAGIPGVAGAPGFPGPRGGPGPQGP
SGASGPRGLAGDPGIVGVKGDAGVKGEPGSAGPQGPPGPSGEEGKRGSTGEQGATGPVGL
RGPRGAAGTRGLPGLAGRSGPMGMPGARGATGAPGARGPPGDAGRAGEPGLVGARGLPGS
PGSSGPPGKEGPAGPAGQDGRTGPPGPTGPRGQPGNIGFPGPKGPSGEAGKPGEKGPAGP
TGLRGLPGPDGNNGPAGPVGLAGAPGEKGEQGPSGAPGFQGLPGPAGPVGEAGKAGDRGI
PGDQGVSGPAGVKGERGESGPAGPSGFAGPPGADGQTGQRGEKGPAGGKGDVGPPGPAGP
AGNTGPLGAAGPAGPPGARGDSGPPGLTGFPGAAGRVGPPGPAGIVGPPGPTGASGKDGP
RGPRGDVGPAGPPGENGLIGPPGLAGEKGSPGEAGSPGAPGPAGPQGQLGSQGFNGLPGS
RGDRGLPGGPGAVGEPGRVGPSGAPGPRGPLGNIGMPGMTGPQGEAGREGSPGNDGPPGR
PGAAGLKGDRGEPGSPGPAGAVGAPGPNGPSGAVGRPGNRGESGPVGSVGPAGPAGARGA
PGPSGPRGEKGVAGDKGERGMKGLRGHPGLQGMPGPNGPSGDSGPAGIAGPAGPRGPAGP
NGPPGKDGSNGIPGAIGPPGHRGPPGHVGPAGPPGSPGLPGPAGPAGGGYDTSGGYDEYR
ADQASLRAKDYEVDATIKSLNTQIDNLLSPEGSKKNPARTCRDIRLSHPEWSSGFYWIDP
NQGCTMDAIKAYCDFSTGQTCIHPHPESIPRKNWYRSSQEKKHIWFGETINGGTEFGYND
ETLSPQSMATQLAFMRLLANQAVQNITYHCKNSIAYMDAENGNLKKAVLLQGSNDVELRA
EGNSRFTFSVLEDGCSRHTGQWSKTVIEYRTNKPSRLPILDIAPLDIGGADQEFGLDIGP
VCFK
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgggacctagaggcccatctggacctcccggttcccctggacctcaaggattccaagga
catgctggtgagcctggagagcccggtcaggctggagctgttggtgttcgtggccctcct
ggacctcctggcaaaaatggtgacgatggtaacaatggcagacctggcaaacctggagat
agaggagtccctggagtacagggtgctcgtggtttccccggaactcctggacttcctggc
atgaagggacacagaggttacaccggtcttgatggacgcaaaggagagcctggtgccgct
ggtcttaagggcgagaatggtgctgctggatcaaatggaacccccggacagagaggtggt
cgtggtcttcctggtgagagaggtcgtgttggcccttctggcccagctggtgctcgtggt
gctgatggcaacactggtcctgctggccctgctggtcctttgggagcagctggtcctcct
ggtttccctggtgcccctggacctaagggagaaattggacccgctggtgccactggccca
tctggacctcagggacaaagaggagagccaggccctaatggtgctgtgggcccagttgga
ccccctggcaaccctggtgctaacggtatcaatggtgctaagggagcagctggcatccct
ggagttgctggtgcccctggtttccctggccctagaggaggccctggcccccagggacct
tctggagcctctggcccaagaggtcttgctggtgaccccggaatcgttggagtgaaggga
gatgctggtgtcaagggtgagcctggtagtgctggtcctcagggaccccctggtccttct
ggtgaagagggcaagagaggctcaactggtgagcagggagctactggacccgttggactg
cgtggacctagaggagctgctggtactcgtggtctgcctggtctggctggaagatctggc
ccaatgggcatgcctggtgcccgtggtgctactggtgcccctggagcccgtggacctcct
ggagatgctggccgtgctggtgagcctggtcttgttggagctagaggtctccctggtagc
cccggcagttctggaccccctggaaaggaaggacccgctggtcccgctggtcaagatggc
cgcactggtccccctggcccaactggacccagaggccagcccggtaatattggattcccc
ggccctaagggaccttctggcgaggctggcaagcctggtgagaagggacctgctggcccc
actggactgagaggtcttcctggtcccgacggtaacaacggccctgctggtcccgttgga
cttgctggtgccccaggtgagaagggagagcagggaccttctggtgctcctggtttccag
ggtcttcctggccccgctggacctgttggtgaggctggcaaggccggagatagaggtatc
cccggagatcaaggtgtatcaggacctgctggtgtgaagggagagcgtggtgagtctggc
cctgctggaccttccggatttgctggaccccctggtgctgatggccagactggacaaaga
ggcgagaaaggacctgctggtggaaagggtgatgttggacctcccggccctgctggacct
gctggcaatactggaccccttggtgctgctggtcctgctggcccacctggtgcccgtggt
gacagcggtccccctggtctgactggtttccctggtgctgctggcagagttggacctcct
ggtcccgctggtattgttggacctcccggtcccactggtgcttctggaaaggatggccca
cgtggtcctcgtggtgatgttggccctgctggtcccccaggagagaatggactgattgga
ccacctggtctggctggcgagaagggatcacccggagaggctggctcacctggagctcct
ggacctgctgggcctcagggtcagctgggatctcagggattcaatggtcttcctggctct
agaggtgaccgtggtcttcctggtggccccggcgctgttggtgagcctggaagagttggt
ccttctggtgcccctggtccccgtggtccccttggcaacattggcatgcctggtatgact
ggtcctcagggtgaggctggacgtgagggaagccctggtaatgatggacctcctggccgt
cctggtgctgctggccttaagggtgaccgtggtgagcctggatcccctggacccgctgga
gctgtcggcgctcctggacccaacggaccatcaggcgctgttggcagacccggaaaccgt
ggtgaatctggacctgttggatctgttggccctgccggacctgctggagcaagaggtgca
cctggaccttctggaccccgtggtgagaaaggtgttgctggagacaaaggagaaagaggc
atgaagggacttcgtggacatcctggtcttcagggaatgcctggacccaacggtccttct
ggtgacagcggccctgctggtattgctggtcctgctggtccaagaggcccagctggtccc
aatggcccccctggtaaggacggttcaaatggtatccccggtgctattggaccacctgga
caccgtggtcctcctggacatgttggacctgctggtcctcctggatctcctggtcttccc
ggacccgctggcccagctggtggtggatatgacacatccggaggctatgatgagtacaga
gctgaccaggcctctctcagggctaaggattatgaggtggatgccaccatcaagtccttg
aacactcagattgacaatctgctttcccctgagggctcaaagaagaaccctgcccgtact
tgccgtgacatcaggctcagccacccagaatggagcagcggtttctactggatcgacccc
aaccagggctgcaccatggatgccatcaaggcctactgcgacttctctactggccagacc
tgcatccacccccacccagagagcatcccacgcaagaactggtacagaagctcccaggag
aagaaacacatttggtttggagagaccatcaatggtggtactgagttcggttacaatgat
gagaccctgagcccacaatccatggctactcagctggccttcatgcgtctgctggccaac
caggcagtccagaacatcacctaccactgcaagaacagcatcgcctacatggatgccgag
aacggaaacctgaagaaggctgtgttgctgcagggctccaatgatgtcgagctcagggcg
gagggcaacagccgcttcacgttcagcgtcctagaggatggctgcagtagacacactggc
cagtggagcaagacagtcattgaatacagaacaaataaaccatctcgccttcccatcctc
gacattgcacctttggacattggtggcgcagatcaagagtttggtttggacattggccca
gtctgtttcaaataa
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