KEGG   Labeo rohita (rohu): 127181750
Entry
127181750         CDS       T09007                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
lroh  Labeo rohita (rohu)
Pathway
lroh03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lroh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    127181750 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lroh03041]
    127181750 (snrnp40)
Spliceosome [BR:lroh03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    127181750 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    127181750 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd EIF3I WDR55 Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 Beta-prop_SCAP Beta-prop_IFT122_1st ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_Vps41 Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N eIF2A Beta-prop_HPS5 Cytochrom_D1 Beta-prop_Nup120_160 WD40_like Beta-prop_IFT140_2nd
Other DBs
NCBI-GeneID: 127181750
NCBI-ProteinID: XP_050992604
LinkDB
Position
19:18847057..18853446
AA seq 347 aa
MIEPKKRGAEMAVVPAGVKRPRTELVAAAQSQQLSAMGPPRSSSLQAPIMLLSGHEGEVY
CCKFHPNGATLASSGYDRLILLWNVYGDCENYATLKGHSGAVMELHYNTDGSLLFSASTD
KTVCVWDSETGERVKRLKGHTSFVNSCFPARRGPQLACTGSDDGTVKLWDIRKKASVHTF
QNTYQVLSVTFNDTSDQIISGGIDNDIKVWDLRQNKLIYSMQGHGDSVTGLSLSADGSYL
LSNSMDNSVRVWDIRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVY
IWDTTSRRILYKLPGHAGSVNEIAFHPEEPIVLSGSSDKRLYIGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgatcgaaccgaagaagcgcggcgcagagatggcagtggttcccgccggggtgaagagg
ccccggacagagctggtggctgcagcgcagtcccagcagctctctgctatgggccccccg
cgcagctccagtctgcaggctcccataatgctgctctctggtcatgaaggtgaagtttac
tgctgcaagtttcaccccaacggagccacgttagcctcctctggatatgaccgcctcatc
ttgctgtggaacgtatatggagactgtgagaactatgcaacacttaaaggccacagtgga
gctgtgatggagcttcattataacactgatggcagtctgcttttttcagccagtacggac
aagacggtgtgtgtgtgggacagtgagacaggggagcgtgtgaagcgtctgaaaggtcac
acgtccttcgtgaactcatgttttccggctcgccgtggcccacagctggcctgtacaggc
agtgatgatggaactgtaaagctgtgggacatcaggaagaaggcctctgttcacacattc
cagaacacatatcaggttcttagtgtgacattcaatgacaccagtgaccagatcatctca
gggggcatcgacaatgacataaaggtgtgggatcttagacaaaacaaactgatttacagt
atgcagggtcatggagactctgtgacaggtctgagtctgagtgcagacgggtcctacctg
ctctcgaactcaatggataacagcgtgcgtgtctgggatatccgtccatttgcaccaaag
gagaggtgtgtgaagatctttcagggaaatgtccataacttcgaaaagaatctcctcagg
tgctcctggtctcctgatgggagtaagattgcagctggttctgctgacagatttgtgtat
atttgggacacaacatcccgtaggatcctttataagctccctggtcatgctgggtctgtg
aatgagattgcgttccatccagaagaaccaattgttctctctggatccagtgataaacgc
ctctacatcggagagattcaataa

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