Labeo rohita (rohu): 127181778
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Entry
127181778 CDS
T09007
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03013
Nucleocytoplasmic transport
lroh03015
mRNA surveillance pathway
lroh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127181778 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
127181778 (ddx39b)
03015 mRNA surveillance pathway
127181778 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127181778 (ddx39b)
03041 Spliceosome [BR:
lroh03041
]
127181778 (ddx39b)
Enzymes [BR:
lroh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127181778 (ddx39b)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127181778 (ddx39b)
Spliceosome [BR:
lroh03041
]
Complex C
Other components
EJC/TREX
127181778 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127181778 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
127181778
NCBI-ProteinID:
XP_050992658
LinkDB
All DBs
Position
19:8241642..8255404
Genome browser
AA seq
435 aa
AA seq
DB search
MTENDVENELLDYEEDEVDAGGAGDTGLGHNDGGLSIRKEGVKGSYVSIHSSGFRDFLLK
PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQ
VSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKRESPHVVVGTP
GRILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK
EIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIF
VKSVQRCIALAQLLVEQNFPAIAIHRAMPQDERLARYQQFKDFQRRILVATNLFGRGMDI
ERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDARTLNDVQDRFEVNISE
LPEEIDISSYIEQTR
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgacggagaacgatgttgagaacgagctgttggactatgaggaggatgaggttgatgca
ggtggtgccggagacacaggccttggacacaacgatggtggattatccatcagaaaagaa
ggggtcaaagggtcatatgtgtccatccactcctcgggattcagagatttccttctcaaa
ccagaactgctgagagcaatagtggactgtggctttgaacatccatctgaggttcagcat
gaatgcattcctcaggcgattctggggatggatgtgttatgtcaagccaagtctggaatg
gggaagaccgctgtctttgtgttggccacccttcagcagctggagccggtgaccgggcag
gtgtcagtgttggtgatgtgtcacacccgagagctggcgttccagatcagcaaagagtac
gagcgcttctccaaatacatgcccagcgtcaaggtggcagtgttctttggtggtttatct
ataaagaaggacgaggaggtgctgaagagagagagccctcatgtggtggtgggaactcct
ggacgtatcctagctctgtctcgcaacaagagtctcaacctgcgtcacatcaagcacttc
atcctggacgaatgcgacaagatgctagagcaacttgacatgcggcgtgatgtccaggag
atctttcgcatgacccctcacgagaagcaggtcatgatgttcagtgccaccctgagtaaa
gagatccgtcccgtctgcagaaagttcatgcaagatccgatggaaatttttgtggacgac
gagaccaagctgacgcttcacggcctccagcagtactacgtcaagctgaaggacaacgag
aagaacaggaagctctttgacctcctggatgtgttggagttcaaccaggtggtgatcttc
gtgaaatccgtgcagcgctgtattgctctggcccagttgctggtggagcaaaatttccct
gctattgccattcatagagcaatgcctcaagacgaaagactagctcgatatcagcagttc
aaggacttccagagacggatcctggtggccacaaacctgtttggccgaggtatggacatc
gaaagagtcaacatcgccttcaactacgacatgcctgaagattcagacacatacctgcac
agggttgccagggccggcaggtttggaacgaaaggtctggcaatcacctttgtgtcagac
gagactgacgcccgcaccttgaacgacgttcaggacaggtttgaggtgaacatcagcgaa
cttccagaggagattgacatctcgtcatatattgaacaaacacgataa
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