Labeo rohita (rohu): 127181930
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Entry
127181930 CDS
T09007
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04510
Focal adhesion
lroh04512
ECM-receptor interaction
lroh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127181930 (col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127181930 (col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
127181930 (col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lroh00535
]
127181930 (col9a2)
Proteoglycans [BR:
lroh00535
]
Extracellular matrix (ECM) proteoglycans
Others
127181930 (col9a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
127181930
NCBI-ProteinID:
XP_050992910
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All DBs
Position
19:15900968..15926383
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AA seq
691 aa
AA seq
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MARFFFILRSLVLLQALCLALSQVTGPPGPQGPPGLPGPAGTPGADGIDGEKGPPGPPGP
AGQKGEAGEPGPDGSPGEDGIDGLIGAKGERGPRGSPGPKGQPGPGGPAGRPGPGLPGLP
GAAGPIGLPGQIGPTGPKGDMGSPGAPGLPGPPGKPGPPGKFLGLEEGSADFQCPTNCPP
GPKGPQGLQGVKGHKGRAGVLGDPGSIGGVGVKGEVGISGEQGIPGPPGPQGLRGYPGMV
GPKGEMGPRGYKGISGPIGIPGRPGEEGPQGPPGEPGDKGDMGERGVRGPQGVVGKKGEN
GLPGIDGKDGTPGIPGIKGATGQNGRPGAPGLQGDPGLPGMPGAKGEIGVKGETGPRGLM
GMQGSPGPQGEPGPPGEAGMEGVPGLKGDRGERGPVGPPGIVGSPGGKGERGPMGVPGAQ
GLTGTKGDKGFQGKVGSKGDVGDPGVEGLAGEKGEKGQSGEPGPKGQQGVTGDQGYNGPT
GDPGKPGDQGPAGLPGPRGLHGERGVPGMPGIQGPPGRDATDQHIIDVVLKMLQEKLAAV
AVSAKRAVLGGAGVMGPPGPPGPPGPPGPQGPHGLTGGRGIPGMIGAAGQIGNTGLKGKR
GAKGERGDPGRPHPGQPGPPGLQGPPGLDGVARDGRPGERGPQGAAGEPGRPGKAGPSGL
PGFCEAAACLAASAYTSPRLQEAGTVKGPST
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggctagattcttcttcatcctcagaagcttggtcctgttgcaggcgctctgcttggcc
ttatcgcaagtgactggtccacccggaccgcagggcccccctggtctccctggtcccgct
ggaactcccggtgccgacggcattgatggtgaaaagggtcctcctggacctcctggacca
gcaggtcaaaagggagaggcaggtgagcctggtcctgatggatctccaggggaggatggc
attgatggtttgattggggctaagggtgagaggggccctcgtggtagtcctggaccaaag
ggtcagccagggcctggtggaccagcagggcgacctgggcctggactgcctggacttcct
ggagcagcaggtcccattgggctgcccggacaaattgggcctactgggccgaagggtgac
atgggaagtcctggagctccaggattacccggacctccaggaaaaccgggtccaccagga
aaatttttgggtttagaggaaggcagtgctgacttccagtgtccaaccaactgtccacct
ggaccgaaaggtcctcagggcctacagggagtgaagggacataaaggtcgtgctggggta
ttgggagatccaggaagcatcggaggagtgggtgtgaagggagaagtcggcatctccggt
gaacaaggaataccaggccctccaggtccacagggtctgagagggtatccaggaatggtt
gggcccaaaggagagatgggaccacgtggttataaaggcatttcgggaccaattggcatc
cctggacgccctggtgaagagggaccccaaggaccacctggagagccaggtgacaaaggc
gacatgggagagcgtggtgtacgagggcctcagggagtggtcggaaagaagggagagaac
ggtcttccaggaattgatggaaaagatggtactcctggcatcccaggaataaagggtgct
acaggacaaaatggaagacctggagctcctggtctccagggagaccctggtttgcctggt
atgcctggagccaagggtgaaataggagttaagggtgagactggaccccgaggattaatg
ggaatgcaaggttctccaggacctcaaggagagcctggtcctccaggtgaagctggcatg
gagggagtcccaggactaaagggtgacaggggcgaaagaggaccagttgggcctcctggt
attgttggctcacctggcggtaaaggagagaggggacccatgggtgtcccaggtgctcag
gggctaactggaactaagggtgataagggattccaaggcaaagtgggatcaaagggagac
gttggtgatcctggtgtagagggattggctggggagaaaggagagaagggacaatctggg
gagcccggacctaagggacagcaaggtgtgaccggcgatcaagggtacaacggccctacc
ggagatcccggtaaaccaggagaccagggtcctgcaggtttacctggtccacgtggccta
catggagaaagaggagttccagggatgccaggaatacaaggaccacctggtcgtgatgct
acagatcaacacatcattgacgtggtcctaaagatgcttcaagagaagttagcagcggta
gcagtgagcgctaagagagcggtgctgggtggagcaggtgtgatgggaccgccaggtcct
ccaggaccacctggacctccaggacctcagggtcctcatggactgacaggcggccgtggc
attcctggaatgatcggagccgcaggccagataggaaacaccggtcttaaaggaaagagg
ggtgcaaagggagagagaggagatcctggacgaccacatcctggccaaccaggaccacct
ggtctgcaaggtcctccaggtcttgatggtgtggcacgtgacggcaggccaggcgagcga
ggaccacagggtgcagcgggtgagccaggccgccccggaaaagctggtccttctggactt
cctggattttgtgaagcagctgcatgtttggcagcgtccgcctatacttctcccagacta
caagaggcgggaacagtgaagggcccatccacttaa
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