Labeo rohita (rohu): 127182008
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Entry
127182008 CDS
T09007
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127182008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127182008
03036 Chromosome and associated proteins [BR:
lroh03036
]
127182008
Enzymes [BR:
lroh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127182008
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127182008
mRNA degradation factors
5'-3' decay
Decapping complex
127182008
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Gene silencing
piRNA pathway
127182008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
127182008
NCBI-ProteinID:
XP_050993035
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All DBs
Position
19:complement(24593317..24603771)
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AA seq
489 aa
AA seq
DB search
MSTKMENTGPALMGLNTHNRQLIGQPKAPSQLGPQTVSAQPGKEPMGIQKPANASQEGPS
IRFGDDWKKSLQLPAKDNRVKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEE
SIPIALSGRDILARAKNGTGKSGAYLIPLLERIDIKKDHIQAMVIVPTRELALQVSQISI
QISKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDKIHMMVM
DEADKLLSQDFVIIIEDIIGFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELT
LKGITQFYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIH
AKMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRS
GRFGHLGLAINLITAEDRFNLKTIEDQLMTDIKPIPGSIDKSLYVAEFHSMNPDCEAEAS
QPDGEFEAL
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacgaagatggagaacactggccccgctctcatgggcttaaatacacataacagg
cagcttataggacagcctaaagccccctctcaattaggaccccaaactgtgagtgctcag
cctggaaaggagcccatggggatccagaaaccagccaatgcatctcaggaaggacctagt
atcaggtttggtgatgactggaaaaaaagcctacagctccctgctaaggacaatagagtc
aaaacttcagatgtgactgcaaccaaagggaatgagtttgaggactactgtctaaaaaga
gagctgctgatgggcatttttgagatgggctgggaaaagccctccccaattcaggaggag
agtattcctattgccctgtctggtcgcgatatactggcccgtgccaaaaatggaacagga
aagagtggtgcatacctgatcccccttctagagagaattgacataaaaaaggatcacatc
caggctatggtgattgttcccactcgtgaactggctcttcaggtcagtcagatcagtatt
cagatcagcaaacacctgggtggtgttaaggtcatggcaaccacaggtgggaccaaccta
cgagatgatataatgcgtctggatgagacagttcatgttgttatagcaacacctggcaga
attttggacttgataaaaaagggcgttgccaaagtggataaaattcacatgatggttatg
gatgaggctgataagctgctctctcaggactttgtgatcattattgaggacatcattgga
ttccttgcaaagaacagacagattctgctctattcagccacattccccatcagcgttcag
aagttcatggcaaagcacctacagaagccctatgagattaatttgatggaggaactgacc
ctaaaaggcattacgcagttctatgcttacgtcacagaaagacagaaagtccactgcctt
aacactctgttctccaggctgcagatcaatcagtccatcatcttctgtaactctactcag
cgagtggagcttttggccaagaagataacgcagttgggctactcctgcttttacattcat
gcaaagatgatgcaggaatacagaaaccgtgttttccatgacttcagaaatgggctctgc
aggaatcttgtttgcacagatttattcactagaggcatcgacatccaggcagtaaatgtg
gtcatcaactttgatttccccaagaacgcagaaacgtatctgcatcgcatcggacgttca
ggaaggtttggacacctgggtttggcaatcaatctcattactgctgaggatcgttttaac
ctgaagaccattgaggaccagctcatgacagacataaaacctatccccggcagcatcgat
aagagtctgtatgtggcagagtttcactctatgaaccctgactgtgaggcagaggcgtct
cagcctgatggagagtttgaagccctttag
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