Labeo rohita (rohu): 127182045
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Entry
127182045 CDS
T09007
Symbol
prdm1b
Name
(RefSeq) PR domain zinc finger protein 1 isoform X1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lroh03000
]
127182045 (prdm1b)
Transcription factors [BR:
lroh03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
127182045 (prdm1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
zf-C2H2_4
SET
zf-C2H2_6
zf-met
C2CH-3rd_BIRD-IDD
zf-C2H2_jaz
STL11_N
zf-C2H2_11
Zf-C2H2_ZNF451_C
B129_C2H2-zf
zf-Vps39_C
zf-MYST
Zap1_zf1
zf-C2HE
Motif
Other DBs
NCBI-GeneID:
127182045
NCBI-ProteinID:
XP_050993100
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Position
19:21747589..21759162
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AA seq
601 aa
AA seq
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MAEIYSGGHLHHFIDGYDVHRSNWMRYVNPARSLAEQNLVACQNGQEIFFYTIRPVEPKQ
ELLVWYSPEFSQRLCGQQEQPDSLKPKYIPDIEYQKQPLPQYTYYPKQPPSPRKLQSEGQ
EDEVDEKIDVEVIERDTPPDTPDEQVVDFSKKIHKAASPEPVHSPLPNQKEMNLNIHPYP
TLSPPQDLPLHLHGLYGHREGLISYPSLPSPRPLQAPYPLLPPYNPHYSRLLLPPYSPPF
PSMLPSKGGLRYNGFLGSDGLPYPSISQPGLLPVTLPYPTPLHGGLKERIPNTPPRGAPA
TPELSPQPKQSPQQMFQKPFSECEEAINLSLATPKSMSPSSSSSPPAPGYKSLPYPLKKQ
NGKIKYECNVCLKTFGQLSNLKVHLRVHSGERPFQCNLCKKSFTQLAHLQKHHLVHTGEK
PHECQVCHKRFSSTSNLKTHLRLHSGEKPYQCKLCGVKFTQYIHLKLHRRLHSSRDRTHC
CQACTRGFIHRFSLNLHQRSGFCPAARPEIPELRRAAEMVERFDASQEAETLPESAGEAQ
VDAALEKWLARSLESGEGKEDIGFLKAFAAVPHGVTAMGHHQERASVVHFNHRPSVKTEE
E
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggcagagatctacagtggtggccacctacaccacttcattgacggctacgatgtccat
cgcagcaactggatgcggtacgtcaacccagcgcgatcgctggccgaacagaacctggtg
gcctgtcaaaacggccaggagatcttcttctacaccatccggcccgtggagcccaaacag
gagctgttggtgtggtacagtccggagttttcccagagactttgcggccagcaagagcaa
ccagacagcctaaagccaaagtacattcctgatattgagtatcagaagcagcccctacct
cagtacacctattaccctaaacaacccccgagcccacgcaaacttcaaagtgagggacag
gaagacgaggtggatgaaaagatcgacgtagaggttattgagagggacacgccacctgac
acaccggatgaacaggtcgtggatttcagcaagaagatccacaaagctgcttccccagag
cctgttcattctccactgcccaaccagaaagagatgaacctaaacattcacccatatccc
accctgtccccaccacaagatcttcctctccacttacacggcctctatggtcatcgagaa
ggtctgatctcgtacccttcattaccctcacctagacccctgcaagctccatatcccttg
ttaccaccatacaaccctcattattcacgtctgctgttgcctccatactctcctcccttc
ccttctatgttgccctcgaaagggggtctccggtacaacggattcctgggcagtgatggc
ttgccctacccttccatatcccaaccaggtctgttaccagttacacttccctatcctacc
ccacttcatggaggtctgaaagaaagaatcccaaatactccacctcgaggagcccctgca
acacctgaactctcgcctcagccaaagcaatcccctcagcaaatgttccagaagcctttc
tctgaatgcgaagaggccatcaacctcagcctggctacacccaagagcatgtcaccttca
tcctcgtcctctcctccggcgcctgggtacaagtctctcccatacccgcttaagaaacag
aacggcaaaatcaagtatgaatgcaacgtctgtctcaagaccttcggtcaactgtccaac
ctcaaagtgcacttgagggtccacagtggagagaggccgttccagtgcaacttgtgcaaa
aagagtttcacccagctagcccacctacagaaacaccacttggtccacactggagagaaa
ccacatgagtgccaggtgtgccacaaacgcttcagcagcaccagcaatctgaagacccac
ctacgcctgcactccggggagaagccgtatcagtgtaagctgtgcggggtaaagttcacc
cagtacattcacctcaaactccaccgtcggttgcacagctctcgtgaccggacccactgc
tgccaagcctgcacgaggggctttatccatcgcttctcattgaacctccatcagcgttcc
ggcttctgccccgccgcccgtcccgaaatcccagagctgaggcgcgcagcagaaatggta
gagcggtttgatgccagtcaggaggccgagactctgcctgagagtgctggagaggctcaa
gtggacgctgccttggaaaaatggttggcgagaagtttggagagcggcgaggggaaggag
gacattggattcctcaaggcttttgctgcagtacctcatggggtcaccgccatgggtcac
caccaagagagagccagcgtggtacactttaaccaccggccctctgtaaagactgaggag
gagtag
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