Labeo rohita (rohu): 127182303
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Entry
127182303 CDS
T09007
Symbol
vps50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127182303 (vps50)
Membrane trafficking [BR:
lroh04131
]
Protein recycling
Others
EARP complex
127182303 (vps50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
127182303
NCBI-ProteinID:
XP_050993506
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All DBs
Position
19:17216168..17395500
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AA seq
990 aa
AA seq
DB search
MQKIKSLMARQGLKSPQESVVDMSPVESFRTPSKEELRELREQPTDPQAEQEIIDSIEEV
YFSSDSFDMVQYELEKLPPDLNLLELEEYRDKLKRQQAAVSKRVADLILEKQPSYVKELE
RVTSLQTNLQLAAVICTNARRQLRSAKEGFTEASLGLLANQKRRQLLTGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYNCISELNSKLQDTLEQIEEQLDVA
LSKTCKHFDVSHYTKVQLAYKLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYKDLCTHITTDSYIPCLTDLCKALWEVMLSYHLTMQWHDEHYKEEETTPGVD
DSSAEGSDESTVGRSYVKKKLEHGLTRIWQDVQLKVKAYLLGTDVSNFKYDDFIVVLDVI
SRLMQVGEEFCGSKSEVLQESIKRQSVNYFKNYHRTRLEELRMFLENETWELCPVKSNFS
IAQLHEFKFMGQCRSPSVSPSRQPESTEPVELSLFEQYLQGGNPFEMQIDNKEEETEDVL
ASNGYESDELEKSVYQDYDSDSDVPEELKQDYVDEQTGDAPVKSVSRETLRSRKRSDYNL
NRANAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHCVSQLFDYYLYAVYTFFGRNDM
HFQTASLPSQGSQPGVSRQTVPVYWYESSGLGLISSRLRTTLSRIQESLIDMEAGGENAG
PHASPEERKEKVPSPHLSQLVILTASDTLYGLAERVVATESLVFLAEQFEFLQPHLDTMM
PSAKKPFLQQFYSQTVSTASELRKPIYWIVAAKAIDYEQMLLLMAGVKWDIKEIMSQHNV
YVDVLLKEFEKFNQRLGDVSKIVRIPLPVSNVLWEHCIRLANRTLVEGYANVKKCSNEGR
ALMQLDFQQFLMKLEKLTDLRPIPDKEFVETYIKAYYLTENDMEQFIKNHREYSMKQLTN
LVNVCLGSHINKKARQKLLAAIDDIDRPKR
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaatcaagtctttgatggcccgtcagggtctgaagagtcctcaggagagtgtg
gttgacatgagccctgtggagagcttcaggacccccagcaaggaggagctgcgggaattg
agagaacaacccacggatccacaggcagaacaggaaatcattgatagtatagaggaagtg
tacttctccagtgattcctttgacatggtgcaatacgagcttgagaaactccctccggat
ttgaaccttctggagcttgaggaatacagagataagctgaagagacaacaagcagccgta
tcaaaaagagtggcagacctcattttggagaaacagccttcgtatgttaaggagctggag
agagtgacgtctctgcagaccaacttgcagctggctgcggtcatctgcactaatgcacga
agacagcttcgttctgctaaagaaggcttcaccgaagccagtctggggctgttagccaat
cagaaacgacgacagctgttgacaggattgttgaaatctttgaggaccataaaaacgctg
caaagaactgatgttcgactgagtgaaatgctggaggaggaagactatccaggcgccatc
cagctgtgtttagaatgccagaaggctgccagcacttttaaacactacaactgtataagc
gagttgaattccaaactgcaagacactctggagcaaatcgaggaacagctagatgtggcg
ctgtccaaaacctgcaagcactttgatgtttctcactacaccaaagttcaactggcatat
aagctgctgggaaagacacagacggctatggatcagctgcacatgcacttcacccaggcc
atccacaacactgtcttccaggtggtgctgggatatgtagagctgtgcgccggaaacgcc
gacaccaagttccagaaaatgcagtacaaggacctttgcacgcacattaccacagacagc
tacatcccctgcttgaccgacctctgcaaggccttgtgggaggtgatgctcagttaccat
ctaaccatgcagtggcacgatgagcactacaaagaagaagagacgactcctggagtggat
gattccagcgcagagggctcagatgaatccaccgtgggccgcagttatgtgaaaaagaag
ctggagcacggcttaacgcggatctggcaggacgtccaattgaaagtgaaagcctatttg
ctgggaacagacgtgtccaacttcaagtacgacgacttcattgtggttctggatgttatc
agcaggttgatgcaagtgggagaggaattctgcggcagcaagtctgaggtgttgcaagag
tccattaagaggcagagtgtaaactactttaagaactatcacagaactcgcctggaggag
ctgcgaatgtttcttgaaaatgaaacatgggagctgtgccctgtgaagtccaacttcagt
attgcccagcttcacgagtttaaatttatgggtcagtgtcgttctccctcagtatctccc
agcaggcagccggaatccacagagccggtggagctttctctatttgaacagtacctgcag
ggtggaaatccttttgagatgcagatagacaataaggaagaggagaccgaggacgttctg
gcttcaaatgggtatgagtcagatgagctggagaagagcgtgtatcaggactacgacagt
gacagtgatgtacctgaggagctgaaacaagactatgtagatgaacagacaggagacgct
ccagtgaagagcgtgtccagagagacacttcgcagccggaagaggtctgactacaatctg
aaccgagccaatgcccccatccttaccaacaccaccctcaacgtgattcgcctggtcgga
aaatacatgcagatgatgaacattttgaagcccatcgcctttgatgtcatccactgtgtg
tctcagctctttgattattacctgtatgccgtctacaccttctttgggcgcaatgacatg
cacttccaaactgcatctctgccttcacaaggctctcaacctggtgtgtccagacagaca
gtccctgtctattggtatgaatcatctgggctgggtttaatcagcagcagactgaggact
acgctcagccgaatccaggagagcctaatagacatggaggctggaggggaaaacgcaggt
cctcatgcgtctcctgaggaaaggaaggagaaggtccccagtcctcatctcagtcagcta
gtgatcctgacagctagtgatacgctctatggcttggctgagagagtcgtcgccactgaa
tcactagtttttctggcagagcagtttgagttccttcagcctcatctcgacaccatgatg
ccttcagccaagaagcccttccttcagcagttctactcacagactgtatctacggccagc
gagcttcgcaaacccatttactggattgtggcggccaaagccatagattacgaacagatg
ctgttactgatggcgggagtgaaatgggacattaaagagataatgtcacagcacaacgtc
tatgtggatgtccttttaaaggagtttgagaagttcaaccagagacttggagatgtgtcg
aaaatagttcggattcctctgcccgtgtccaatgtcttatgggagcactgcatccgtctg
gccaacaggacattagtggagggctatgcaaatgtgaagaaatgcagtaatgagggacgt
gcactgatgcagctggacttccagcagttcctgatgaagctggagaagctcaccgacctc
agaccaattccagacaaggagttcgtagagacctacatcaaggcatactaccttactgag
aatgacatggagcagttcatcaagaaccacagggagtactctatgaagcagctgactaac
ctggtcaacgtctgcctgggatcccacatcaacaagaaagcaagacagaaactccttgca
gctatcgatgacattgaccggccgaaaagataa
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