Labeo rohita (rohu): 127182345
Help
Entry
127182345 CDS
T09007
Symbol
col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
KO
K16630
collagen type XXII alpha
Organism
lroh
Labeo rohita (rohu)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Motif
Other DBs
NCBI-GeneID:
127182345
NCBI-ProteinID:
XP_050993569
LinkDB
All DBs
Position
19:28824189..28891130
Genome browser
AA seq
1622 aa
AA seq
DB search
MKFRFGLRISLVLTILALTLYGGSVEGQRAGCKNVHYDLVFILDTSSSVGKDNFEKIRQW
VANLVESFDVGAEKTRVAVVRYSDRPTAEFNLGRYKTLEEVKRAAGNIRYLGGNTKTGDA
ISFTTTNIFTEKAGARPATKGIQKVAILLTDGRSQDYVLEPSIAAAAAGIRLFAVGIGEA
LREELEEIAAEPKSAHVFHVTDFDAIDKIRGRLRRRLCENVLCPNMKVQAGRFRPNSTSD
GLTEVPGFDLMEYFNVRDFLGEKFEPGQTPYVRLGTMPIVQQTEDVLPQGLPDEYAFVTT
FKFRKTSRKEDWYLWQVYDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVRAVFKNPEVEN
LFDRNWHKIGMRVDSKSVSLFLDCKHIDTLPIEEREDIDIQGKTVIGKRLYDSVPIDFDL
QRMVIYCDGKQSEQETCCDIPGGLCEQSLVTEAPPLPLPTPKPTSAEQKKPAAANCSCPA
GERGETGLPGATGPKGEKGDPGLKGAEGPPGPKGQKGERGQAISIKGDRGEKGDSGERGE
PGARGERGERGSNGLPGLAGKKGDRGERGEQGVSGEAGLPGPLGPKGIQGDAGLPGSPGP
QGVSGVAGVKGDKGASGERGEPGLDGFPGKPGVPGKDGPRGLIGAPGASGVKGEKGERGP
AGLPGDAVQLAGLKGETGAPGVRGPPGADGPSGPPGPLGPQGLPGEPGENGPRGKKGESG
LPGVDGLPGPPGPQGPPGPPGSPGATGPPGLPGEIGFAGKPGEAGKPGLPGKDGLDGEPG
NDGEKGQRGEPGQDGFPGKPGPKGDEGPPGPRGPPGERGVPGLPGELGPVGPKGERGSQG
ERGKDGLAGLKGEKGDKGEIGPRGPAGVPGNVANVIPEPGEPGKPGEKGEKGDQGKPGEM
GQRGLPGEQGFRGQQGPAGPKGDAGEKGEAGRHGDPGPPGLTGPQGLRGLPGNVGIPGSI
GPPGIAGQRGEKGDAGKDGPSGPPGPAGEPGLRGEIGLPGKGKEGPKGDSGPPGPPGPPG
LKGLPGPQGMQGMPGNRGPPGEGTTGPEGPPGQTGPPGPAGLRGPPGVSGPQGPAGHNGL
PGRPGEKGSPGEPGKAADISDLNLKDICSDCPPGPAGQPGMPGPPGEKGLTGPPGTSGQD
GYVGPPGPTGPAGPPGADGAKGIKGDRGPVGAPGDKGEKGPPGPPGYPGAAGAMGQPGND
GNPGPVGPPGSPGEKGKEGLQGIQGPPGLPGLMGLMGKAGKDGRPGETGEPGKPGEPGSP
GRDGLRGMPGFKGHRGEPGPPGSKGEDGKQGVPGREGPAGKDGNSGPPGPEGMRGPRGEP
GQPGEPGPTGKPGSQGNPGQPGHKGETGSPGLPGFPGPKGPSGSPGPIGPEGKQGMYGKP
GDRGQKGEKGDNGIKGDKGPVGDPGIPGNPGPPGRKGHTGMMGMSGPPGEVGPPGSPGSP
GQPGLPGLRGETPSMEQMRRLIQEELSKQLDAKLAYLMAQMQPAHIKSSVGRPGPPGLPG
KDGPPGRQGPPGEPGIPGQNGAEGSRGPVGPKGERGARGEKGEDGVGQRGEPGPVGPMGP
AGMPGYGKDGLPGAAGAQGEPGNPGPHGQPGPPGPPGQCDPSQCAYYASLASRPHTKNVK
GT
NT seq
4869 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttcgatttgggctcaggatctctttggtcctgacaatactggcactgactctg
tacggaggcagtgttgaaggacaaagggcaggttgcaagaatgtccactatgatcttgta
ttcatcctggacacctcttccagtgtgggcaaggacaactttgagaagatccggcagtgg
gtggcaaacctggtggaatcttttgacgtaggtgcagagaagacgcgtgtggccgtggtt
cgctacagtgaccgtcccaccgccgaattcaacctgggcaggtacaaaacccttgaggag
gtcaagcgtgctgctgggaacatccgctacctgggtgggaacaccaagactggagacgcc
atcagcttcactaccaccaacatcttcacagagaaggcaggggcgaggcctgccacaaag
ggcattcagaaagtggcgatcttgctaacggatggcaggagtcaggattatgttttggag
ccatcgattgctgcagcggctgctggaatcaggctgttcgccgtaggaattggggaagcc
ctgagggaggagctggaggagattgcggcggagcccaaaagcgctcatgtgttccatgtg
acggactttgacgccattgacaagatcaggggcaggctaaggaggagactctgtgagaat
gtcctgtgtccaaatatgaaagtccaggcaggccgtttcaggccaaacagcaccagtgat
ggattgacggaggtcccaggatttgatttgatggagtacttcaatgttagagattttctt
ggagaaaaatttgagccaggtcagaccccctacgtccggctcggtaccatgcccatcgtc
caacaaacagaagatgtgttacctcagggtctgcctgatgaatatgcctttgtgaccaca
tttaagttcaggaaaacctctcgtaaagaagactggtacctgtggcaggtctatgacaaa
tacggcatcccgcaggtttccatccgtctggacggggagaacaaggcggtggagtacaac
gctgtgggcctgacgaaggacgcagtccgagccgtctttaagaacccagaggtggagaat
ctgtttgatcgtaactggcataagatcggcatgagggtggactccaagtctgtgtccctg
ttcctggactgcaagcacattgacacgctgcccatagaagaaagagaagacatcgacatt
cagggaaagactgtcatcggcaagagactctacgacagcgttcccattgattttgacctc
cagaggatggtgatctactgcgatggtaaacagtctgagcaagagacatgttgtgatatt
cctggtggcctgtgtgaacagtctctggtaactgaggcccccccactcccactgcccact
ccaaaaccaacaagcgctgagcagaagaaaccagctgcggccaactgctcctgtcctgca
ggggaaaggggtgagacaggtctaccgggtgccacggggcccaagggtgaaaagggggat
cctggtcttaaaggggcagaaggaccaccaggacctaaagggcagaaaggagaacgtggc
caggctatctctatcaaaggtgatagaggagaaaagggggacagcggcgagcgtggtgaa
cctggagccagaggtgaaagaggagaaagaggatcaaatggtttacctggtctggctggg
aaaaaaggcgatagaggagagagaggtgaacaaggagtttcaggtgaagctgggttacct
ggacctctcggaccaaagggtatccaaggtgatgctggtctacctggatcaccgggtcct
caaggggtgtctggtgtcgctggagttaaaggagacaaaggagcttctggagaaaggggt
gaaccaggtttagatgggtttccagggaaaccgggtgttccaggaaaagacggtcctagg
gggctgattggtgctcctggtgcaagtggagtcaaaggagaaaagggtgaacgaggtcct
gctggattgcctggcgatgcggttcagctggcaggactcaagggggagactggcgcccct
ggtgtacgaggacccccaggagcggacggtccctctggacctcctggcccacttggacct
caaggtttgcccggtgagccgggtgagaacggaccaaggggtaaaaaaggtgaatcagga
ttgccaggagtcgatggtcttccaggaccacctggtcctcaggggcctcctgggcctcct
ggcagccctggagcaacaggacctccaggattaccaggtgaaatcggtttcgcaggaaaa
ccaggtgaagcaggaaaaccaggcctgccaggaaaggatggattggatggtgaacctgga
aacgacggcgagaaggggcaaagaggagaacccggacaggatggctttcctggtaaacca
gggccgaagggagatgaaggcccaccaggaccacgaggacctcctggtgaacggggagtg
cctggtttgcctggagagctcggcccagtgggacccaaaggagagagaggaagccaaggt
gagagaggaaaagatggacttgctggcttgaaaggagagaaaggagacaagggcgagatt
ggccccaggggtccagccggggttccaggcaacgtggccaatgtgattcctgaacctggt
gaaccaggtaagccgggagaaaagggagagaaaggagatcaaggaaaaccaggcgagatg
ggtcaaagaggacttcccggagagcagggattcagagggcaacaaggacctgcgggccct
aagggcgatgctggtgaaaaaggagaggcagggagacacggagacccaggtccgcctgga
ttgacaggccctcaggggctccgagggctcccaggcaatgtgggtattccaggcagtatc
ggtccacctggtattgctggacagagaggagagaagggagatgctggtaaagacggtccc
tctggaccccctggcccagccggtgagcctggtttaagaggagaaatcggtttgccagga
aaaggcaaagagggaccaaagggtgattctggacctccaggtccacctggacctcccggc
ctgaagggtttacctggtccacagggaatgcaagggatgccaggaaacagaggaccacca
ggagagggaaccactggacccgaggggcctcccggacaaacagggccaccaggaccagcg
ggtttgagaggacctccaggagtaagtggaccacagggacccgctggacacaatggttta
ccaggaagacccggagagaagggctcccctggagaaccaggaaaggctgcagacatttct
gatctgaacctgaaggacatttgttcagattgcccccctggacctgctggacaaccgggt
atgccaggacctccaggtgaaaaaggtcttactggaccacctgggacaagcggacaggat
ggatatgtgggtcctcctggaccaacagggcctgcaggaccaccaggtgctgatggagcc
aaggggatcaaaggtgacagaggtcctgtaggagcacctggagataaaggtgaaaagggc
cccccaggacctcctggttatccaggggcagcaggagctatgggtcaacctggtaatgat
ggaaaccctggacctgttggaccacctggatctcctggagaaaagggtaaagaaggtctt
cagggaattcagggaccaccaggtcttccaggtttaatgggcttgatgggtaaagccgga
aaggatggaagaccaggagaaacaggagagccgggtaaaccgggagagccaggatcacca
ggaagagacgggctcagaggaatgcctggtttcaaaggtcacagaggggaaccaggacca
ccagggtcaaagggtgaagatgggaaacagggtgttcctgggcgtgagggtccagccggg
aaagacggtaactccggaccaccagggccagagggcatgagaggaccacgaggagaaccc
ggtcagcctggagaaccaggaccaacaggcaagcctggatctcagggaaatcctggtcag
ccaggacacaaaggtgaaacagggagtccaggattacccggcttcccaggtccaaaaggt
ccatcgggttcgcctggtccaattggcccggagggcaaacaaggcatgtatggaaaacca
ggagacagaggacagaagggagaaaagggtgataatggaataaaaggagacaaaggacct
gttggggatccaggcattccgggtaaccccgggcctcccggcagaaagggtcacacagga
atgatgggcatgtccggacccccaggggaagtgggtcctcctggatcccctggttctcca
ggacagccaggtctcccaggtctcagaggtgagacgccatcaatggaacaaatgcggcgg
ctcattcaagaggaactctccaaacagttggatgctaagttagcttacctcatggctcaa
atgcagcccgcacatatcaagagttcagttggccgtcccggtccacctggtctgccaggt
aaagatggacctcctggccgacagggtccacctggagagcctggaatacctggacaaaat
ggagcagaaggatctagaggtccagttggtcctaaaggtgaacgaggtgcaagaggcgaa
aagggagaggatggtgttggacagagaggagagcctggtccagttggtcccatgggtcct
gcaggtatgccgggatacggaaaagatggtcttcctggagctgcaggcgctcagggagag
cctggtaatcctggtccacacggtcagcccggacctcctggaccgccagggcagtgtgac
ccctcacaatgtgcctactacgccagtctggcatcaagacctcacaccaaaaacgtcaag
gggacttaa
DBGET
integrated database retrieval system
