KEGG   Labeo rohita (rohu): 127182383
Entry
127182383         CDS       T09007                                 
Symbol
seh1l
Name
(RefSeq) nucleoporin SEH1 isoform X1
  KO
K14299  nucleoporin SEH1
Organism
lroh  Labeo rohita (rohu)
Pathway
lroh03013  Nucleocytoplasmic transport
lroh04150  mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:lroh00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    127182383 (seh1l)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    127182383 (seh1l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lroh03019]
    127182383 (seh1l)
   04131 Membrane trafficking [BR:lroh04131]
    127182383 (seh1l)
Messenger RNA biogenesis [BR:lroh03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     127182383 (seh1l)
Membrane trafficking [BR:lroh04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    127182383 (seh1l)
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_RIG_2nd Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 WDR90_beta-prop_4th WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 WDR55 EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR35_TULP_N Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR36-Utp21_2nd Beta-prop_IFT122_1st
Other DBs
NCBI-GeneID: 127182383
NCBI-ProteinID: XP_050993633
LinkDB
Position
19:complement(4358000..4370995)
AA seq 364 aa
MFVAKSIAADHKDLIHDVSYDFHGRRMATCSSDQSVKVWDKGDDGEWHCTASWKTHSGSV
WRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGQSHWIKRTTLVDSRTSVTDVK
FAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHPP
MIAVGSDDSNVTYSGKVQIYEYNENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHVLAI
ATKDVRIFKLIPLRRDSANSSGPTKFEVQVMAQFDSHNSQVWRVSWNITSTLLASSGDDG
CVRLWKANYMDNWKCTGILRGDGSPVNGSSGHAAALSTVGVPGSAQMVVGAASAGRKKAQ
LMPG
NT seq 1095 nt   +upstreamnt  +downstreamnt
atgttcgtggcgaagagcatcgcagcggatcataaagatctgattcacgatgtgtcttat
gactttcatggtcggaggatggcgacctgctccagtgatcagagcgtcaaggtctgggac
aaaggcgacgatggagaatggcactgtactgctagctggaagacacatagtgggtccgtg
tggagggtgacatgggcacatcctgagtttggtcaggtgttggcgtcttgttcctttgac
cgcactgcagctgtatgggaggagatcgttggagaatccaatgacaaacagcgtggacag
agtcactggatcaagaggaccacactggtggacagtcggacgtcagtgaccgatgtgaag
tttgcaccgaagcatatgggcctgatgctgaccacctgctctgcagacggcgtggtgcgc
atctacgaggcccctgatgtgatgaacctcagccagtggtcactgcagcacgagatctcc
tgcaagctctcctgctcctgcatctcctggaacccctccagttctcgagctcatcctcca
atgatagccgtgggcagtgacgacagcaacgtcacatacagtggaaaagtgcagatctac
gagtataatgaaaacacaaggaagtatgccaaagcagagacgttgatgactgtgacagac
ccggttcatgacattgcctttgctcctaatctggggagatccttccatgtgctggcgata
gcgaccaaagacgttcgcattttcaaactcataccattgaggagagacagcgccaacagc
tctggtcccactaagtttgaggtgcaggtgatggctcagtttgacagtcataactctcag
gtgtggcgcgtgagctggaacatcaccagcactctgctggcctcctctggagacgacggc
tgtgtgcggctctggaaagctaattacatggacaactggaagtgcacagggatcctgaga
ggagacggcagcccagtgaacggctcctctggacacgctgcggctctgagcacagtgggc
gtccctggatccgctcagatggttgttggggccgcgtctgctggcagaaaaaaagctcag
ctgatgccaggctaa

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