Labeo rohita (rohu): 127182732
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Entry
127182732 CDS
T09007
Symbol
hif1ab
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha b
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04137
Mitophagy - animal
lroh04140
Autophagy - animal
lroh04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
127182732 (hif1ab)
04137 Mitophagy - animal
127182732 (hif1ab)
04148 Efferocytosis
127182732 (hif1ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lroh03000
]
127182732 (hif1ab)
Transcription factors [BR:
lroh03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
127182732 (hif1ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
Rbsn
Motif
Other DBs
NCBI-GeneID:
127182732
NCBI-ProteinID:
XP_050994230
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Position
20:complement(12813197..12828967)
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AA seq
774 aa
AA seq
DB search
MDTGVVTEKKRVSSERRKEKSRDAARSRRGKESEVFYELAHQLPLPHNVTSHLDKASIMR
LTISYLRMRKMLSPDEADKENELESQLNSFYLKALEGFLMVLSEDGDMVYLSENVSKSMG
LTQFDLTGHSIFEFSHPCDHEELREMLVHRTGSKKTKEQNTERSFFLRMKCTLTSRGRTV
NIKSATWKVLHCTGHVRVQEHGEGSGDSGFKEPPLTYLVLICEPIPHPSNIEVPLDSKTF
LSRHTLDMKFSYCDERITELMGYEPDDLLNKSVYEYYHALDSDHLTKTHHNLFAKGQATT
GQYRMLAKKGGFVWVETQATVIYNAKNSQPQCIVCVNYVLSGIVEGDVVLSLQQTVTEPK
DVEKENQEIEDEASEGNILKLFKPEGLRCRIRSSELYEQLKEEPEALTVLAPAAGDTIIS
LDFNNSDSDMQLLKEVPLYNDVMLPSSSEKLPISLSPLTPSDSTPALTKLETGAEDFPFS
SASDRGPDSANTPSTSGLGSSGPNSPMDYCFQVDSDISSEFKLDLVEKLFAIDTEAKTPF
SSQAMEDLDLEMLAPYIPMDDDFQLRIPSPLDPLPSGPHSVSAMSSLFQPLPSPTSPVSS
SSSVVKQEPSSRAPSPLHLLQEVCSAPVSPFSGSRDVSPARSPTPQNSNQLNNRELSPKM
LAIQNAQRKRKLEEVTTLSEAVGLSALLQSVDSAIEPGKRAKVLEVKGSSVLGGNKTILI
LPSDVASRLLCSSLESSGGLPQLTRYDCEVNAPVQDRHHLLQGEELLRALDQVN
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atggatactggagttgtcactgaaaagaaaagggtgagctcggagcgcaggaaggagaag
tccagggatgcagcgcgatctcgcaggggaaaggagtccgaggtgttctacgagttagca
caccagctccccctgcctcacaatgtcacctcccacctggacaaagcctccatcatgagg
ctgaccatcagctacctgcgcatgaggaagatgctcagccctgatgaagcggacaaggag
aacgaactggagagtcagctgaacagcttttatctgaaggcactggagggtttcctcatg
gttttgtctgaagatggagacatggtttatctctctgagaatgtcagcaagagcatgggc
ctcacacagtttgatctgactggtcacagcatcttcgaattttcacacccatgtgaccac
gaggagctacgagagatgctggtccacaggacaggatccaaaaagaccaaggaacaaaac
acagagcgcagcttcttcctgcgtatgaagtgcacgctcactagcagagggcgcactgtc
aatatcaagtctgctacgtggaaggttcttcactgcactggtcacgtacgtgtgcaggag
catggcgagggttcaggagactcgggctttaaagagccgcctctgacctatcttgtgctc
atctgtgagcccattcctcatccttctaacatcgaggtgcctctggacagcaagaccttc
cttagccgccacactctggacatgaaattctcgtactgtgatgaaaggatcacagagctg
atgggatatgagccagatgatctgctgaacaagtctgtgtacgaatactatcatgcccta
gattcagatcacctcaccaagacgcaccacaacttgttcgcgaagggccaggccaccaca
ggccagtaccgcatgctggctaagaagggtggttttgtgtgggtggagactcaggccacc
gttatctacaacgccaagaattctcagcctcagtgcattgtgtgcgtcaactacgttctc
agtggcattgtggagggggatgttgttctgtctttgcagcagaccgtgacagagcccaag
gatgtggagaaagagaaccaggagatagaagatgaggcctctgaagggaacatactcaaa
ctcttcaagccagaaggcctcaggtgtcgcattaggagctctgaactttatgagcagctg
aaagaggagcctgaggctctcactgtgttggcacctgctgcaggagacaccatcatctct
ctggacttcaacaactcagattctgacatgcagctgctgaaggaggtgcccctctacaat
gatgtcatgctgccctccagcagcgagaagctgcccatcagtctgtctcctctgacgccc
agcgactccaccccagccctgaccaaactagagaccggggcggaggacttccctttcagc
tctgcctctgatcgtggtccagactccgcaaacacaccttccacatctggactcggctcc
tcggggcccaacagccccatggattactgtttccaagtagactcagacatcagttctgag
ttcaaactggacctggttgagaaactcttcgctattgataccgaagcaaagacccctttt
agctcccaggccatggaggatctcgacttggagatgctggctccatacatcccaatggac
gatgacttccagcttcgcatcccctctccgctggatccgctcccctctggccctcactct
gtgtcagccatgagctccctgttccagcccttaccctcccctacatctccagtctcctct
tccagcagcgtagtgaagcaggagccatcatcacgggccccttcgcccctgcacctgctg
caggaggtgtgcagtgcccctgtctcacccttcagcggcagtcgggacgtttcccctgct
cgctctcccaccccacagaacagcaatcagctcaacaacagagagctgtctccaaagatg
ttagccatccagaatgcccaacgtaagagaaagctggaggaagtgacaacactttctgag
gctgttggactgagtgctttgcttcagagtgtggacagtgctatagagcctggcaagagg
gcaaaggtgttagaggttaaaggatcgagtgtgcttggcggaaacaaaaccattcttata
ctgccctctgatgtggccagtcgtctgttgtgcagttctttggagagcagcggcgggctg
cctcagctaacacgttacgactgcgaagtcaacgctccggtgcaggaccgacatcatctc
ctgcagggggaggagctcctgcgtgctctggaccaagtcaactga
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