Labeo rohita (rohu): 127182765
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Entry
127182765 CDS
T09007
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lroh03041
]
127182765 (ddx1)
03016 Transfer RNA biogenesis [BR:
lroh03016
]
127182765 (ddx1)
Enzymes [BR:
lroh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127182765 (ddx1)
Spliceosome [BR:
lroh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
127182765 (ddx1)
Transfer RNA biogenesis [BR:
lroh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
127182765 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
DUF4882
Motif
Other DBs
NCBI-GeneID:
127182765
NCBI-ProteinID:
XP_050994289
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All DBs
Position
20:21469784..21479995
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AA seq
740 aa
AA seq
DB search
MAAFGEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGRSAVKTGGAVFNKWQMNPYDRSTAFAIGPDGVLCQSREFKEWH
GCRSTKAVTKGKYYYEVSCHDQGLCRVGWSTAQASLDLGTDKYGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYIDLDKGQVSFSKNGNDLGLAFEIPPQLKNQPFFASCVLKNAELKF
NFGDEPLKNQPKDGYVALNQASDGHVVKSSQTGSAKVSQVKSSSNAPRALIIEPSKELAE
QTLNNVNQFKKYVDNPKLRDLLIIGGVAAKEQLSILESGVDIVVGTPGRLDDLISTGKLD
LSQVRFLVLDECDGLLSAGYTDFIMRVYNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKTDKLWERLGKNHIRTDEVHAKDDTRPGAN
TSEMWSEAIKILKGEYAIRAIKEHKMDQAIIFCRTKIDCDNMEQYLIKQGGGPDKKGHQF
SCVCLHGDRKPNERKYNLERFKKQEVKFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRADRMGLAISLVAMEKEKVWYHVCPNRGKGCYNTKLKENGGCTIWYNEKELLS
EIEEHLKCTITQCEPDIKVPVDEFDGKVTYGQRRTAGGGLYKGHVDILAPTVQELANLER
EAQTSFLHLGYLPNQLFKAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttcggagaaatgggagtgatgcctgaaattgcacaggcggtggaagaaatg
gactggctgttgccaacagacattcaggccgaatccattccactgattttgggcggagga
gacgttctcatggctgctgagactggaagtggaaaaactggagcattcagtattccagtc
atccaaatagtctatgagacccttaaagaccagcaggaggggaagaaaggacgcagtgct
gtaaagacaggaggagcagttttcaataaatggcagatgaacccttatgacagaagtact
gcatttgctattggtccagatggtgtgttatgtcagagcagagagtttaaagagtggcat
ggctgtcgttccaccaaagcagtcacaaaagggaagtattattacgaagtaagctgtcac
gatcaagggctgtgcagggtgggctggtccactgcccaagcatcactggacttgggaacg
gacaaatatggatttggcttcggaggaactggaaagaaatctcacaataagcagtttgat
agctatggagaggagttcactatgcatgacaccattggatgctacatagatctggataaa
ggccaagtgtcattctccaaaaatggtaatgatctgggtctggctttcgagatccctcca
cagctgaaaaaccagcctttctttgcttcctgtgtgctgaagaacgctgaactgaaattc
aactttggtgatgaacctttaaaaaaccaacctaaagatggatacgtggccctgaaccag
gcttcagacggtcatgtggtcaaatccagccagacaggcagtgctaaagtgagtcaggtc
aaatccagttctaacgcccccagagctctcatcatcgagccgtctaaagagctggctgaa
caaaccctcaataacgtcaaccagttcaagaaatatgttgataaccccaaactgagggat
cttctgatcatcggtggagtggctgctaaagaacagctgtccattttagaaagcggagtt
gacattgtggttgggaccccaggcagactggatgatctcatatccacaggaaagctagat
ctatcccaagtccgtttcctggttctggatgagtgtgatggactcctctcggctggctac
actgacttcatcatgagggtctacaaccagatcccacaggtcacttcagatggcaaaaga
ctacaggtgatagtttgctctgctacactgcactcatttgatgtgaagaagctctcagag
aagatcatgcatttccccacatgggtggatctaaagggagaagattctgttccagaaacg
gttcatcacgtggtggtgccagtcaacccaaaaactgacaagctttgggagagactgggg
aaaaaccacattaggactgatgaagttcatgccaaggatgacacacgacctggagccaac
acttccgagatgtggtcagaggccattaagattctgaagggagagtacgcgatcagagcc
attaaggagcataagatggatcaggccatcatcttctgcaggacaaagattgactgtgac
aatatggagcagtacttaatcaagcagggaggaggtccagacaagaaaggacaccagttt
tcttgtgtctgtcttcatggcgacaggaaaccaaatgagcgcaaatataacttggagcga
ttcaagaaacaggaagtgaagtttctgatttgcacagatgttgctgctagaggaattgat
attcatggagttccttatgtaataaatgtgactctaccggatgagaagcagaactatgtt
catcgcattggaagagttggcagagcggacaggatgggtttggctatatctctggttgcc
atggagaaagagaaggtgtggtaccacgtttgtcccaacagaggaaaaggctgctataac
accaagctcaaagagaatggaggatgtactatttggtacaacgagaaagagctcttgtca
gaaatcgaggaacatctgaaatgcaccattactcagtgtgaacctgatatcaaagtccct
gtggatgaatttgatggcaaagtgacttatgggcagcgcaggactgcagggggtggtctc
tataagggccatgtggatatattggccccaaccgtgcaggaactggccaacctggagaga
gaggcccagacatccttccttcatctcggctatctacccaaccagctctttaaggccttc
taa
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