Labeo rohita (rohu): 127182820
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Entry
127182820 CDS
T09007
Symbol
srsf5b
Name
(RefSeq) serine and arginine rich splicing factor 5b isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03040
Spliceosome
lroh05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127182820 (srsf5b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
127182820 (srsf5b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lroh03041
]
127182820 (srsf5b)
Spliceosome [BR:
lroh03041
]
Common components
Common spliceosomal components
SR proteins
127182820 (srsf5b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
Nup35_RRM_2
RRM_occluded
RRM_5
SET_assoc
DUF7376
Motif
Other DBs
NCBI-GeneID:
127182820
NCBI-ProteinID:
XP_050994402
LinkDB
All DBs
Position
20:complement(18643740..18652675)
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AA seq
290 aa
AA seq
DB search
MSALWMWVVASSHYCCRNARMSGCRIFIGRLNPSAREKDVERFFKGYGRIRDIDLKRGFG
FVEFDDPRDAEDAVYELDGKELCNERVTIEHARVRLRGGRGRGGGGGGGRFPGRYARGSQ
DSRRNPPPMRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFATHS
DLKNALEKLSGKEINGRKIKLVEATKKKSRTRSRSNSSSRSRSRGRSTSRSRSRSHSHSP
KSHNRSRSRSRSASASPVRPKEAPRAESVSPPPPAQRPPPSRSPSADSRH
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctctctggatgtgggttgtggcctcgagccattattgttgcagaaatgcgagg
atgagcgggtgtcgtattttcatcggtcgattaaacccctctgctcgagagaaggacgtc
gagcggttcttcaagggttatggaagaatcagggacattgacctgaaaagaggcttcgga
tttgtagaatttgatgatccgagagatgctgaagatgctgtttatgagcttgatggtaaa
gagctctgcaatgagagggtgaccattgaacatgcccgtgtccgtctgcgtgggggccga
ggccgtggtggtggtggtggtggaggacgttttcctggtcggtatgctcgtggctcccag
gacagtcggaggaatcctccaccaatgcgcacagagaatcgcctcattgtggagaatttg
tcgtcgagagtcagctggcaggatttaaaggatttcatgagacaagctggagaggttact
tttgcagatgcccatcggccaaagcttaatgagggtgtggttgagtttgctactcatagt
gatctaaaaaatgccctggagaagttgtctgggaaggagatcaatggaaggaaaatcaaa
cttgttgaggcaaccaagaaaaaatccagaactcggtctcgttcaaatagctcatcccgt
tctcgttcccgagggcgctccacttcacgttctcgtagccgctcccattcccacagcccc
aaatcacataaccgctcaagaagtcggtcccgttcggccagtgcttctcctgtgcggccc
aaagaagcaccacgcgctgaatcagtgtcaccgccgcccccagcacagcgccccccaccg
tcccgttccccgtctgccgacagccgtcactag
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