Labeo rohita (rohu): 127182893
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Entry
127182893 CDS
T09007
Symbol
fip1l1a
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127182893 (fip1l1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127182893 (fip1l1a)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
127182893 (fip1l1a)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
127182893
NCBI-ProteinID:
XP_050994541
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All DBs
Position
20:complement(14308395..14381503)
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AA seq
511 aa
AA seq
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MSARELEKTADESADDETDWLYGDNSFEEEETTEKEVFSALIGDVDGLNGLNYQESESDS
DDDVCVTIGDIKTGGSQGSSFGSSSISLNIKTSVSGSKSRGLDLDAEGNVLQVDVESFEE
KPWRKPGADLSDYFNYGFNEDTWKAYCDKQRRLRMSLEILSLGSSNKIMVHQSSSSDLSE
PPSRKSSGSINVIGGQAGTISRVEGRRRHSADENNIQVVSEQSSDAELSSPKLLPFFPPN
IPPPPFPPPSISTTPPLIPPPPGFPLPPGAPPPMIPPLDRLVSYRNWRERQRRCSRQRKQ
EHRMALHKQKKEKKKDRERKGERKSSGRLVGGYDRRSATPYPFSAGVYSPAVSMASWSSV
IDSGKAWENYTRHDKERVREKTRERGHRKERERERERYRETDRDHSPSSQDHRSEEERVS
RHRDHSHYGSERYRESSGREGVRDRHRERRHRDRNEQHRSSRSGSSRRRHDSDDADSHRR
HRHKRSRHNRESLEPSEECSVDQENQSEATE
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcgagagagttagagaaaacagctgatgagagcgctgatgacgagaccgactgg
ctttatggagataacagttttgaggaagaagaaacaacagaaaaggaagtgttcagtgct
ctgattggcgatgttgatggtctgaatggacttaattaccaggaaagtgaatcagacagt
gatgatgatgtctgtgtgaccattggtgacattaaaacaggcggatctcaaggctcgtca
tttggttccagttccatcagtctgaacataaagacctctgtatcaggctccaagtccaga
gggctggatctggatgctgaaggcaatgtcctgcaggtggatgtggagtcctttgaggag
aagccatggaggaagccaggtgcggatctatctgactactttaactatggttttaatgag
gacacctggaaggcatactgtgataaacagagacgactacgcatgagcctggagattctg
agcctggggtcatcaaacaaaataatggttcatcagagttctagtagtgatctgtcagag
cccccatccaggaagtcaagtggttcgatcaatgttatcggaggacaagcagggaccatc
agtcgagtggaaggcagaagacgtcacagcgctgatgaaaataacatccaggtcgtgtcg
gagcagtcctcggatgcagagctatcgtccccaaagctgttgcccttctttcctcccaat
atcccacctccgcctttccctcctccctccatcagcaccacaccacccctcataccacca
ccacccggtttcccattacctcccggggcccctccacctatgataccaccattagatagg
ttggtgtcatatagaaactggagagagagacagaggagatgtagcagacagagaaagcaa
gaacataggatggcactacacaagcaaaagaaggagaaaaagaaagacagagaaaggaag
ggagagagaaagagcagtggacgtttggtgggaggctatgatcgacgctcagctacacct
taccccttctctgcaggtgtgtattcacctgcagtgagcatggcttcatggtcaagtgtg
atagacagtggcaaagcgtgggaaaactacacccgtcatgacaaagaaagggtgcgagag
aaaaccagagaaagaggacacaggaaagagcgagagcgggagagagagcggtatagagaa
acagaccgagatcacagtccctcctcccaagaccacagaagtgaggaggaacgtgtgtct
cgacacagggatcacagtcattacggaagcgagaggtacagagaaagctcgggaagagaa
ggagtaagagacagacatcgagaaagaagacacagagacaggaatgaacaacacagatcc
tcacgcagtggcagcagtaggaggcgtcatgatagtgatgacgcagatagccacaggaga
cacaggcacaaacgctctagacacaaccgagaaagccttgagcccagcgaggagtgcagt
gtggaccaggagaaccagtcagaggccacagaataa
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