Labeo rohita (rohu): 127182938
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Entry
127182938 CDS
T09007
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03008
Ribosome biogenesis in eukaryotes
lroh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
127182938 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
127182938 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lroh03021
]
127182938 (xrn2)
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127182938 (xrn2)
03009 Ribosome biogenesis [BR:
lroh03009
]
127182938 (xrn2)
03016 Transfer RNA biogenesis [BR:
lroh03016
]
127182938 (xrn2)
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127182938 (xrn2)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
127182938 (xrn2)
Ribosome biogenesis [BR:
lroh03009
]
Eukaryotic type
Pre-60S particles
RNases
127182938 (xrn2)
Transfer RNA biogenesis [BR:
lroh03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
127182938 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
PGBA_C
Motif
Other DBs
NCBI-GeneID:
127182938
NCBI-ProteinID:
XP_050994596
LinkDB
All DBs
Position
20:complement(30296187..30328733)
Genome browser
AA seq
958 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVHCLEERPKEYNGVKIPVDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELAEEKQKMREEVIQRGGYLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLTNDPGWRNITVFLSDASVPGEGEHKIMDFIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCGQIGHEIKDCQGLAREKKGEHDEFADTIPVSEQE
FIFIRLTVLREYLEKELTMASLPFPFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKDVVHKTGGYLTEHGFVNLERVELIMQAVGVAEDNIFKKRKDDDESFKRRMKE
KKKRMKAEQRPSFVPDGQFAPHALGGRDRPMAVQNARQAAYEMRMQGNQRNQEAAQSLRA
MMRNGKNPAGSSDNMDNRGVKRKAEDSDSEPEPEDNVRLWEEGWKQRYYKTKFDVDATDD
EFRKKVVKSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKGMFSDFEKGTKPF
KPLEQLMGVFPAASGNFLPTTWRALMSDPESSIIDFYPDDFAIDLNGKKYAWQGVALLPF
VDERRLRAALADVYPDLSLEEVRRNSLGSDIMFVGKSHPLCDFIRELYLAESHEATEIPA
ELCHGIQGILNLDEDPILPDKPVESPIPTLRDISSNNAIGIKFKDPQYDDGFVFKAVILP
GAKIPSKVLKPGDWEQGNRGPWRPQLGFNPNRQQAHLDQSAFRKLNHYADRNQGPGLFGA
GPPFESQHRGGQYSNAPPPRSYHQGNYRPPQRDHYPQNQYSRPTPANPAAPYPRFQQGSH
GWDRAMQSQSSAYQQNQQRGRGGWRPPHNQQDSRRGGPQQGFGQGYALPPPSRRYNWS
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccgcgtttttccgctggttgagtcggaagtatccgtcaataatagtacac
tgtctggaggagaggcccaaggagtacaatggcgttaaaattccagttgataccagcaag
cccaatccaaatgaagtggagtttgacaacctgtatcttgacatgaatggaattattcac
ccatgcacccatccagaggacaagccagcacctaaaaatgaagatgaaatgatggttgcc
attttcgaatatattgaccgtctctttaacatcgttcgaccgagacgggttctgtacatg
gctattgatggtgtggctcctcgtgccaaaatgaaccagcagcgctcaaggcgtttccgg
gcatctaaagaaggagtggagcttgcagaggagaaacagaaaatgagagaagaagttatt
cagagaggtggttacctgccacctgaggaaataaaagaacgttttgacagtaactgcatc
acccctgggacagagttcatggataatttggccaaatgtttgcgatattacatcgcagac
agattgaccaatgaccctggatggcgcaatatcactgttttcttgtcagatgctagtgtt
cctggagaaggagagcataaaattatggatttcatcaggagacagagagctcagccaaat
catgacccaaacacacatcactgtctctgtggagctgatgctgatttgatcatgttgggt
ttggcaacacatgaacccaactttaccattataagagaagagtttaaacccaacaaaccc
agaccctgcgctctgtgtggtcagataggccacgagatcaaagactgtcagggactggcc
agagaaaaaaagggcgagcatgatgaatttgcagacacaattccagtatcagaacaggag
ttcatattcatccgactgactgtgttacgagagtatctagagaaggagttaacaatggcc
agcctgccgttcccgttcgacttcgagcggagtgtcgatgactgggtgttcatgtgcttc
tttgtgggaaatgactttttgccccacctaccgtctcttgagatcagagagggtgccata
gatcgtctggttggcatctacaaagatgttgtgcataagactgggggctacttaacagaa
cacggctttgtcaatctcgagcgcgtcgagctcataatgcaagccgtaggggtggcagag
gacaacatcttcaaaaagcgcaaagacgacgatgagagttttaaacggagaatgaaggag
aagaagaaacggatgaaagcggagcagcgtccatcgtttgtccctgatggtcagtttgct
cctcacgctctgggtggcagagacagacccatggcagtgcagaatgccagacaagctgca
tatgaaatgaggatgcagggaaatcagcgcaatcaggaagcggctcagtccttgagagcc
atgatgagaaatgggaagaatcctgctggatccagtgataacatggataatcgtggtgtg
aaacgtaaagctgaggacagtgacagtgaaccggaaccagaggataatgtcaggttatgg
gaggaaggctggaaacagcgttactacaaaaccaaatttgatgtggacgcaacagacgat
gagtttcgtaagaaagtggtcaagtcgtacgtggagggcctgtgctgggtcctcaggtac
tactatcagggctgtgcgtcctggaagtggtattttccctttcattatgctccgtttgcc
tccgacttcaaagacatcaagggcatgttcagcgatttcgagaaagggaccaaaccgttc
aaacctctggagcagctcatgggtgtatttcctgctgccagtggaaacttcctgccaaca
acatggagagccctgatgagtgacccagaatcctcaatcattgatttctaccctgatgac
tttgccattgatttgaatgggaagaagtacgcctggcagggtgttgctttgttgccgttt
gtcgacgagcggaggttacgagcagcgctggcagacgtctaccccgatttatccttagag
gaggtgagaaggaacagtctaggaagtgatatcatgtttgtggggaagtcccaccctctt
tgtgatttcatccgggagctctaccttgcagagtctcatgaggccactgagatccctgca
gaactttgccatggaatccaaggtatattaaatctagatgaagaccctattctaccagat
aaaccagtagagtcgccaatcccaacgctgagagacatcagcagcaacaacgctattgga
atcaaattcaaggatccgcagtatgatgatggttttgtgttcaaggctgttatcctacca
ggggcaaagatccctagcaaggttcttaaaccaggcgattgggagcagggtaaccgcggc
ccgtggagacctcagctgggatttaacccaaaccgtcaacaagcccatttggaccaatca
gctttcagaaagcttaatcactatgcagacagaaatcaagggccgggtctgtttggcgcc
ggcccaccttttgagtctcagcataggggcggtcagtacagcaatgccccgccccccaga
agctatcaccagggaaactaccgtccaccccaaagagaccattaccctcaaaaccagtat
tccagacccactccagcgaaccctgccgcgccgtatcccaggtttcagcaaggatctcac
ggctgggatcgggccatgcaatcccagagctccgcgtaccagcagaaccagcagagagga
cgaggaggatggagaccccctcacaatcagcaggacagccgcagaggaggacctcagcag
gggtttggacagggttatgctttgcctccaccatcgcggcgctacaactggagctga
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