Labeo rohita (rohu): 127183015
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Entry
127183015 CDS
T09007
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127183015 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lroh03000
]
127183015 (arid1b)
03021 Transcription machinery [BR:
lroh03021
]
127183015 (arid1b)
03036 Chromosome and associated proteins [BR:
lroh03036
]
127183015 (arid1b)
Transcription factors [BR:
lroh03000
]
Eukaryotic type
Helix-turn-helix
ARID
127183015 (arid1b)
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127183015 (arid1b)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
127183015 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
127183015
NCBI-ProteinID:
XP_050994744
LinkDB
All DBs
Position
20:3710154..3805609
Genome browser
AA seq
2176 aa
AA seq
DB search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NT seq
6531 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgggtctggtcgcgaatcatcaagtgaaaaatgttggaagcggagatccccct
ccttcgcctcatcatcgcacacctccacagcaacagtcgcaagcattccatcagcagcca
cagcaccagcagcgagccgtccaccacaacaacatcaacatcaacccgacacccgtgcgc
ggaggagattcggggaatcgacagcatggagggaaagaaaacgctctggagacgcaggtc
gatcgccatccgcgtttgctgaatacaagtgacgaggaggatcgctcgtccaaaaccggg
ggggatcggatgggcagcaggtacgagcactccaactttggaccaacgagcaacaataac
aacaacaacaacagcggcggcggcggcggcggcggtggcagcgcgtcccaaagcgggaac
agctcagtttctgagtttaatcattattacgggaatggaagaggagggccttgctttgat
caacatggcggacaacaaagccctaggacggctttaatgcatcaagcacagggcaacatg
gatcaagtgcaaaactcccacgaagggtaccacaataatccatacaaccactatcccaac
taccggccggggtacggtggcgctggatacggtatgatgagcccgtcgcggcaggggaac
atgatgggcccaggtaccaattcgcctactgctgctgctgctagtcatggcaaggctgct
atggcctctactaccccagctcccggtgccaatgttgggggctttcagaggttccccgga
caaaaccaacagcacccttctggagctacacccaccctaaaccagcttctgacatctccg
agtccgatgatgcgcggatatggcagcggctatcaagattacagtaacccgccgcagcag
cagcagcagtccggtatgggtctgggcaaagacatgagctccccgtacagccccgctgcc
agtcacggctggggagcacaacaaagaaaccacccggccatgagccctgggaataacggg
aacagcagagctcaggtggcacctatggaccctatggccatgaagcgttctcagatgtat
gggatgggtaacagtccctactctcagccaggcggaacttatccaggacagccatacgga
tcacccactcctcaccgatacccaatgggaatgcaggggcgtggccaagtgggcatgggc
gggatgcagtaccctcagcaacagcagatgccggctcagtacgggccacagggaatgggc
ggctactgtcagcaggggcagcccccatatttcagtcctccacagcagcagtcggcggcg
ccctctcaacccccatacatgcagcagcgcgctcctacacaacaggagactctgcaggag
ggatatggtagcaggggccagtctgggaaaccaaaccacgatgacatgggtcttactcag
caggaccgcccgtccagcctcccggatctgtctggctctatagacgacctccccaccgga
acagaggcgggtctcagttcggccgtcagcgcttcgggttctaccagtagccagggcgag
cagagtaaccccgctcagtctcccttctcaccccacgcctcgcccagagtccccagcatg
cgcagcgggccctcgccctcgccggttggatcacctgtgggttccagccaatcacgatct
gggcccatatcacctgccagtgggccaggtacacagatggcccctcagaccccagggaac
gttccagacgtgggctcccattccactcacagtcagtcgcccatgtctcaggagagaggt
tttgcacctaacatgcagcgcaatgcacctggtccccaatttggaggccagcagcctgga
ccttctatgtctccacactcctgtcccactggccctatacaccataatgtgggctcgtat
cagctgggcccctcttatgggccccagagtggccagtatggcccttcaggtaactaccca
cgccctccgaactatggcggagcacctggtgccaactacagtggccctggcccaggcatg
ggcaacagtcttggcatgaatgccagcagtccaatgcacgggcagggcccagggcaaccc
tgtggctctttgaccacggctcgaggaccagggcatgcagccggtggccggccataccca
gcaggctccagtaatgtggctccaacctctcccaacatgcctcagtctgctggcccagga
atgggtccacctcctcccaatgtcagtcgcaaacccctcgagagtggccctgcatctgct
cagcagaacccagtcccctctggacagccaaggccttcctttggcaggtcccctgtatac
cccggcctgtccgggcctgggggacggccagcctccttccctatcccacacccccatcac
cctcactacagttctgggcaaggccaggggcagccacacgccgagctgtatgggccaagc
gggtttcagggtgcgtcccacattcttgggttgggtcctgggggcccctacaaccatcca
ccgagcaacagctcagccaggatgacccctcaaggaccgtcctacaacacagtgcccaca
gggcccatggcaggctcaggggacagcatgatgcccacagatcccaaacagagagctgag
cacaaggaggagggcagcacacccaccacagagcctcctaagccaaaggacaactacggt
tctcagtgtgtgtcccagcctcccaccccgtcccctctgtcccccagcccagctagtctg
tcgtcttatcagggggacgacagcgatagcattagcagccctgcctggccaaagaacccc
agcagccccaagcacagctcggggaacatgacaaacgagaagataacacgactgtacgac
atgggctgtgagccggagaggagggcatgggtggatcgctacatcgccttcatggaggag
aggggcacgcctgtccccaacctgccttcagtgggcaagaagccgctggatctgtgccgc
ctctacctctgcgttcgagaaatcggaggcttggctatggtaaataagaacaagaaatgg
agagagctctccacccatctgaatgtggggacgtccagcagctctgccagttccctcaag
aagcagtacatccagtacctgtttgcctacgagtgcaaagtggagcgtggagaggaaccc
ccacctgatgcgttcactatgggagagagcaagaagcagccacagcaggccaagatccag
ccaccctcacctgcaaactcaggctctcttcaagggccgcagactcctcagtctacaggc
agcagcactatgaccgagatgcctggggacctaaagccgccaacaccagctaccacaccc
cacggacaagtgacccctcagccaactggcagaaacagtggtgttagtgtgcaagatcca
ttctctgaaagcagtgacccagccttccaaaagcgaggccccatgcatggaggaggcagt
ggagatgccacatctagaatgcagtttgacaccagtaaggatccctatggagctgctaga
aaaggtggctctgagcccttcatgccagggcagatgccaggcagtggcatgcaggaaatg
tatcctcgtggaccgccctcaggcatgggtataggcccacgaccccagtactcctacaat
cctgggtttgagaggaggccagaccatgtcatgggtccagaggggggaattgcccctcct
gggaatcagaacaacatggtgccttccaacagtgatcccagcatgttctcaggcagtaga
tacgcctctcatcagagacatggacatgacggctatgggcagcagtaccctcacagcatg
ccatatggtgcacatgggatgtatccccaacagcagggttataagcggcctggagaaggg
atgtatggtcctcctgctaagcgccatgagagtgaagcctatggtatgcagtacggtggc
cagcagcctgacatgtacagccaatatggttacccagagcgtaggcccatgcaaagcccg
tttccctatccatatggacgtgatcgcatgcagccaggtgggcagggacctcctcagcac
agcatgatgagtggtggaccacccccatcctccaactccagcggtgggcctcaggggaac
atgtggcacaccaggcacgacatgagttacccttaccccggccgccagggtcacggggcc
cccttcccctccatgagccgtggagatgatccagaagtcagggccagtcaggacagtcag
tggcctggtcagcgtcaatccccctacccaccacactcatcgtcctcttccagctccatg
cctgccatggctagccggcaaccaccttcttcctatcaatctcctccagcgatgccaaac
catatctctcgagtcccaagccctgcgccattccctcggtctgtgggtggctctatgtca
cccaataaggctcatatgatggcctctatgaagcagatgcaaaagccgggtggtcccggg
tccatgccatgctctcaaagcggtggtcttcctgggcaaggcttcccagcaatacatcgg
gaggtcacttacccattggactcggtggaagccacgcagcctcatcttaaaccccgccga
aggttaacatccaaagaaattggcacaccagaggcttggcgtgtgatgatgtccctgaag
tctggtttgcttgctgagagcacatgggccctggatactataaacatcttgctgtatgat
gataacacagtgtcttcctttggcctatctcagttgcccggtttcttggagctcattgtt
gaatatttcagaaggtgcttaatagagatcttcgggatccttgaggaatatgaagtcgga
acagaaggccagaaaacccttcttggtccatgtccggaacccacagaaaaagagcaacct
tccaatcaagacctaaaaagccaatccaatacagaacaggtggagcgattagatgcagag
cctgagaaacctcagcccagcagctcagcagcagcgcttaacatggagaaaagggaagac
tccgcagaagccaaggacattggtaaagaactatgtcctccagtggagcccagacccaag
caagccagcaagtatgacaaactcccagtgaaagttgaggaaagagaggctgtggctgat
tgtgtggaggatcgttcagagctgctaggcttggctggggagttcaccagcgggcttctg
cattggaaggcgggcggaggggactccactgcccacatccagacccatttcgagagacat
agagaagaaaaagcagaagaagaagaagaacagaagcccttagagaatcaggaaggtgca
caggcacctggaaaagaaacggttgaagaggagcatgggagggaagaggaactgaaaaga
gaacttccagggccctcagaggaaaacttgacagccactgtagatgatgtgctaagttct
cgtccagggtgcctatcagaaggtgaaacccagacatttcccttccgaaacagagagaac
aagagcagcattactttgctggaagatgagccccggtgctgggatgaagcgcctctttcg
gtagccgacggctggcaagatgagttggctaagcgctgcatctgtgtgtccaatatcatt
cgtggactgtccttcgtcccgggcaatgacagcgaaatggctaggcatcccggtttagtg
ctcattctcggaaagctagtgcttctgcaccacgagcaccctaagaggaaaaggatgccc
cctacctaccagcgagaggaagagcgaggtctggcttgcagcaaggacgaatggtggtgg
gactgcctgggagccttgcgtgagaacaccttggtcacccttgccaacatttcaggacaa
ctagacctgtctatctacccggaaagtatctgccttccaattctggacgggctgctccac
tggatggtgtgcccttcggcggaggcccaggaccccttttgcacagcaaacggcttctcc
tcgctcacgccgcagaggctggtgctggagtgcctgtgcaaactgagcatccaagactct
aacgttgaccttctgctagccacacccccttttagcagacaggagcgcctctttgccacg
ttagtgcggcacgtcggcgagcgaaagagtcaggtgtgccgcgagatggccgtagccgtt
ctctccaatcttgcacagggtgacccgacggccgcccgagccgtcgccctgcaaaagggc
agcgtgggagccttgataagcttcctagaggacagtgttgccatggcacagtatcagcag
agccctcacagtctcttgcacatgggacactccacccatcccgagccgcccagcatcaac
atgatgtgccgggccgccaaagccctgctggccatggcccaagtggaggagaacaggccc
gagtttgtgctctacgagagcaggcttcttgatatctcgctgtcctccgtgctgaactct
ggcgtggcgggtatcctgtgtgaggtactgtttaagctcggccgctcgtga
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