Labeo rohita (rohu): 127183147
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Entry
127183147 CDS
T09007
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04010
MAPK signaling pathway
lroh04020
Calcium signaling pathway
lroh04144
Endocytosis
lroh04510
Focal adhesion
lroh04540
Gap junction
lroh04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
127183147 (pdgfra)
04020 Calcium signaling pathway
127183147 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
127183147 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
127183147 (pdgfra)
04540 Gap junction
127183147 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
127183147 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
lroh01001
]
127183147 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
lroh04090
]
127183147 (pdgfra)
Enzymes [BR:
lroh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
127183147 (pdgfra)
Protein kinases [BR:
lroh01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
127183147 (pdgfra)
CD molecules [BR:
lroh04090
]
Proteins
127183147 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
I-set
Ig_3
ig
Ig_2
VEGFR1-3_N_Ig-like
V-set
VEGFR-1-like_Ig-like
Ig_5
Kinase-like
Motif
Other DBs
NCBI-GeneID:
127183147
NCBI-ProteinID:
XP_050994950
LinkDB
All DBs
Position
20:complement(14136204..14162314)
Genome browser
AA seq
1459 aa
AA seq
DB search
MGFLETHLVLGIVLLGIFSDVSKPWPVTNSDKKVFILTPHSEFNITCFGERRVTWLEPLP
LNIEVHSGINQSTLVITDAEASNTGYYTCLYEGQPEKDTDIYVFVPDPDVPFVSEPAAET
DEMGKAIPCRATDPHSQVILRNLQSGDEVSVLYDHKIGFFGVLPPGRYVCETSVNEKTVQ
SIVYEVTNDKDVDDDDYDGVKSFNIQLRASTEDLKEGDAVNLTCETPPVNIFHQQWLHPQ
KQAREAVPMKLTFPDKVQYILNIPKASVADTGRYECAVTNHLTGQTKSLNLGITVHESSF
VEIISNGIGPVEVVSLLEEKEFTIYIDADPEPKVRWLKDGLPLDDSYISTKTTHLEGLRY
ENILVLRHPIEEDSGIYEIVASTGSKTSRFTFKLLVEAMYPDLPQSVLAPVMWPQRDSME
VTLHSTFRLTCRGQVELSWHSPVYLHDQIDSEKKGLFISTVTVGDATAAHTGEYICYYDS
SNNTEETSIYIYVPDPETPFVPSMAPFENHVLTSHDEMEIPCRVTDPSASVSLINMETNQ
VLPSVYDTKRGFIGLFGAGTYVCRALINGQQHDSIEYIVHGWTGGSDVQVELRAQKKALL
VGETIIVDCVTRGSEMLEDHWKYPGKLADRGVKTVKENKRDLEIHYTLTVANASPKDSGV
YACSITDIMSNESQTKQLTITVYDREFVHLNSVTGPVETAKLDEVREFKVDIQSFPAPKI
TWLKDGSVLGDVAAEITTNLLKIDETSYQSVLTLIRAKGEDSGNYTIRAETGSQIASNSF
YLQVKVPPVIVDLMDIHHGSAAGQEVVCTAGGSPAPDVDWYICKNIKHCANDSSQWMPLP
INSTDITVELQMDVDNHIESHIIFHHLESTIAVRCLARNDMGAVSREVKLVSNGPHSELT
VAAAVLVLLVIVIISLIVLVIIWKQKPRYEIRWRVIESVSPDGHEYIYVDPMQLPYDSRW
EFPRDSLVLGRVLGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELK
IMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHKNRDGFLSRHTEKGKKDLD
IFGINPADESSRSYVILSFEGKGDYMDMKQADTMQYVPMLEMSEASKYSPIQRSDYDHPP
SHRQFNESEVENLLSDDTNEGLTTVDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLSQ
GKIVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEI
FSLGGTPYPGMVVDSSFYNKIKSGYRMAKPEHASSDVYELMMKCWNSEPEKRPSFHNLSD
TVASLLPSGYKRCYERVNHDFLKSDHPAVTRVQCIDNDDAYMGVLYKNQGKLKDRESGFD
EQRLSSDSGYIIPLPDLDPLSNEDYSKRNRHSSQTSEESAIETGSSSSMTKREGETLEDI
TLLDEMCLDSGDLVEDSFL
NT seq
4380 nt
NT seq
+upstream
nt +downstream
nt
atgggttttctggagacacatctcgttttggggattgtcttactagggatattttcagat
gtttcaaaaccttggccagttactaattcagataaaaaggtatttattctgacacctcat
tctgagttcaacatcacttgctttggtgagaggagagtgacatggctcgagccattaccg
ctaaacatcgaagtacactccggaattaatcaaagcactttggtgatcactgatgctgag
gcctctaacacgggatactacacctgcttgtatgagggtcaacctgaaaaagacactgat
atctatgtttttgttccagatcctgatgttccgtttgtgtctgaacctgctgctgaaaca
gacgagatgggcaaagctatcccctgccgcgctacagacccacattctcaagtgattctc
agaaacctgcagagtggggatgaggtttctgtgctttacgaccacaaaatcggctttttc
ggtgtattaccaccaggtcgctatgtttgcgagacgagcgtgaatgaaaaaacagtgcag
agcatcgtttatgaagtgacaaatgacaaggatgtcgatgatgatgattatgatggagtg
aagagcttcaacatacagttgagagccagtacggaggacctgaaagagggggatgctgtc
aatcttacctgtgagacgcctcctgtgaacattttccaccagcagtggctgcatccccaa
aaacaggccagagaggctgttccaatgaagttaacttttccagataaggttcagtacatc
ctcaacatcccgaaagcctctgtggcagacactggacgctacgagtgtgctgtaaccaac
catttaactggacaaaccaagtctctcaacctgggaatcacagtccacgagagctctttt
gtggaaataatatctaatggcattgggccagtggaggttgtgtcacttctggaggaaaaa
gagttcactatttacatcgatgctgaccctgagcccaaggtcaggtggttaaaagatggc
cttccgctggatgacagctacatctccaccaagaccactcatctggagggcctcaggtat
gagaatattttggttctccgccaccccatagaggaggacagtggcatctatgagattgtt
gcctccactggttccaagacatcaagatttacgttcaaactgctagttgaagccatgtac
ccagacctgccacagtcagtgctggctccagtgatgtggccccagagggacagcatggag
gtgactctccactccactttccgactcacgtgtcgaggccaggtcgagctgtcctggcac
agccctgtatatctccatgatcagattgactctgaaaagaaaggactcttcatctccacc
gtgactgttggcgacgcgacagccgcccatacaggagagtacatctgctactatgattcc
agcaataacactgaggagacctccatctatatctatgtgccagatccagaaacgccattt
gtgccatccatggccccttttgaaaaccatgtcctgacgagtcacgatgaaatggagatt
ccctgccgtgtgacggaccccagcgccagcgtctctctgattaacatggagaccaatcag
gttctgcccagtgtctatgacaccaagagaggattcattggcctcttcggtgctgggacg
tatgtctgcagggccctcattaatggacagcagcatgacagcatagagtacatcgttcat
ggctggacaggagggtctgatgtgcaagttgagctgcgagcacagaagaaagctctgctg
gtgggtgagaccatcattgttgactgtgtgaccagaggcagtgaaatgctggaagaccac
tggaaataccctgggaaactggcggatcgaggagtgaaaaccgtaaaggagaataagcga
gatcttgagatccattatactctgacagtggctaatgcctcaccaaaagacagcggtgtc
tacgcctgctccatcactgacattatgagcaatgagagccaaaccaaacagctcactatt
acagtctatgatcgtgagtttgtgcacttaaattcagtgactgggccagtggagactgct
aagttggatgaggtgcgagagttcaaggtggacatacagtctttccctgcccccaaaatc
acatggttaaaggacggctcagtcctgggagacgttgctgcagagattaccaccaacctc
ctaaaaatcgacgagaccagctaccagagcgtgttgaccctgatcagagctaaaggagag
gacagtgggaactataccatcagggcagaaacaggcagccagattgccagcaacagtttc
taccttcaggttaaagttccccctgtgattgtggacctgatggacatccaccatggctct
gctgcaggtcaggaagtggtttgtactgctggcggctccccagcccctgacgtggactgg
tatatctgcaaaaatattaaacactgcgccaacgattcctcccagtggatgccacttccg
atcaactctacggacatcacagtggaactgcaaatggacgtggacaaccatattgagagt
cacatcattttccaccatctggagagtacgattgctgtgcgctgtctggccaggaatgac
atgggcgctgtttcacgggaggttaaacttgtttcaaatggtccgcactcggagctcact
gtggctgctgctgttctggtgctgctggtcattgtcatcatctcactcattgtgctggtc
attatctggaaacagaaaccacgttatgaaatcagatggcgtgtgattgaatcggtcagt
ccggacggtcacgaatacatctatgtcgatcccatgcagcttccatatgactcccgctgg
gagttccctcgggattcacttgtactgggtcgtgtcctgggctcaggagcttttgggaaa
gtggtggaaggcactgcttacggactaagtcgttctcaacctgtgatgaaagtggctgtt
aaaatgcttaaaccaacagcacgctccagtgagaaacaggctttgatgtcagagctgaaa
attatgacccacctgggccctcacctaaacattgtcaaccttctgggagcatgcaccaaa
tcaggaccaatctacattatcacagagtattgtttctatggagacctggtgaattacctg
cataagaacagagatgggtttctcagccggcacacagaaaagggcaagaaagatctagac
atctttggcatcaacccagccgacgagagtagcaggagctacgtcatcctgtctttcgag
gggaaaggtgattatatggacatgaagcaagcagacaccatgcaatacgtccccatgctg
gaaatgagcgaagcctcaaaatactcccccattcagagatcagactatgaccatcctccc
tctcacagacagtttaacgagagtgaagttgagaaccttctctcagatgacaccaatgaa
ggcctgacgacagtggatctcctcagtttcacctatcaggtggctcgagggatggagttc
ttggcctctaagaattgtgtacacagagacttggctgcacgtaatgtcttgctgtctcaa
ggcaagatagtgaagatctgtgactttggactggccagagacatcatgcacgataacaac
tacgtctccaaaggaagcaccttccttccagtgaagtggatggcccctgagagtatcttt
gataacttgtacactacactcagtgacgtctggtcttacggcatcttattatgggagatc
ttctcgcttggagggactccttatccaggtatggttgtggattccagcttctacaacaag
atcaagagcggataccggatggcgaagcccgagcacgcttccagcgatgtctatgagctt
atgatgaagtgttggaacagtgaaccagagaaaagaccatctttccacaatttgagtgat
acggtggcctctctgctgccctcaggatataagaggtgctacgaacgtgtgaatcatgac
ttcctgaagagcgatcaccccgctgtgactcgggtgcagtgcattgacaatgatgatgca
tacatgggtgtgctctacaagaaccagggcaaactgaaggaccgcgagagcggctttgat
gaacaaaggctcagctctgacagcggttacatcattcctctgccggacctcgacccactg
tcaaatgaagactacagcaagaggaatcgccacagctctcagacatcagaggaaagcgca
atagagacgggctctagcagctccatgacgaagcgtgagggagagaccctggaggacatc
accttgctggacgagatgtgcttagactcaggagacctggtggaggacagtttcctgtga
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