Labeo rohita (rohu): 127183215
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Entry
127183215 CDS
T09007
Symbol
hmbox1b
Name
(RefSeq) homeobox-containing protein 1 isoform X1
KO
K24885
homeobox-containing protein 1
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lroh03000
]
127183215 (hmbox1b)
Transcription factors [BR:
lroh03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
127183215 (hmbox1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
AbiJ_NTD3
HTH_31
DUF494
HTH_37
HTH_26
RAP1
Motif
Other DBs
NCBI-GeneID:
127183215
NCBI-ProteinID:
XP_050995087
LinkDB
All DBs
Position
20:30699130..30712583
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AA seq
462 aa
AA seq
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MSHYTDEPRFTIEQIDLLQRLRRTGMTKPEIVHALDTLERLDREHGDKFGRRGPSDSNAT
NSTTSSTTPTSNNTSNATMATSSTTSTATQTQFHGNLSPSPSNSYATSPPAVLPSPVSLV
AMAQNGRDALAATPNGKLSPNRYPVNSAAATRSYGLEGSEEDLDIDDKVEELMRRDSTLV
KEEIKAFLGNRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFYRWYQLEKTTPG
ATLNMRPTPVSLDEMEWRQTPPPISSAPGSFRLRRGSRFTWRKECLAVMESYFSDNQYPD
EAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIGSFFQEATIL
ESHGIDVQSPGGHSNSDDVDANDYNEQGCEVTYFEKRGVNRPFGYYRLEPTSPTQDDAGN
HADHQDPISLAVEMAAVNHSILALSRPGGVANEIKTESLDDD
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgtctcactacacagatgagccacgcttcaccatcgaacagattgacctgctccagaga
ctgcggcgtacaggtatgaccaaacccgagatcgtgcacgcgctggacaccctggagcga
ctcgaccgcgaacacggggacaagttcggccggcgcggcccctctgactccaatgccacc
aacagcaccacctccagcactacacccacctcaaacaacactagcaatgccaccatggcg
acctcctccaccacttccacagcgacgcaaacgcagttccacggtaatttatcgccgtcg
cctagcaacagttacgccacgtctccacccgccgtcttaccctcgccggtctctctggtc
gccatggcacaaaacgggcgggatgctctggcggcaacgcccaatgggaaactgtcgcca
aaccgttatccggtgaacagcgcggcagccaccaggtcatacgggctggaggggtcagag
gaggacctggatatagacgacaaggtggaggagctcatgaggcgggacagcaccctggtg
aaggaggaaatcaaagcctttctgggcaacagacgcatttcacaggccgtggtggctcag
gtcacaggcatcagtcagagcagaatctctcattggctcctccagcaaggctcagatctc
agcgaacagaagaaacgagctttctatcgctggtaccaactggagaagacaacaccaggt
gccacattaaatatgcgccccactcctgtatcattggatgagatggagtggcgtcagacc
ccgcctcccataagctccgcccctggaagcttccgcctgcgcagaggcagtcgattcacc
tggaggaaggaatgtctcgctgtgatggagagttatttcagtgataatcaatatccagat
gaagccaaacgagaggaaatcgccaacgcctgcaatgctgttattcagaaaccaggaaag
aagttgtctgacttggaaagagtcacatcattgaaagtctacaactggtttgccaaccga
cgcaaagaaatcaagaggagggccaatattgggtcttttttccaagaagccacaatcttg
gagagtcacgggatagatgtgcagagtcctggaggacactccaacagcgacgacgttgac
gctaatgactacaacgagcagggttgtgaggttacctattttgaaaagagaggcgtgaac
agaccctttggttactaccgtctggagcccacctcaccaacacaggatgatgccggcaat
cacgcagaccaccaggaccccatctcccttgctgtggagatggcagctgtcaatcacagc
atcctcgccctatcccgtccgggaggcgtggccaatgaaatcaagacagagtcactggat
gacgactga
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