Labeo rohita (rohu): 127183372
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Entry
127183372 CDS
T09007
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh00100
Steroid biosynthesis
lroh01100
Metabolic pathways
Module
lroh_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
127183372 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
lroh01006
]
127183372 (fdft1)
Enzymes [BR:
lroh01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
127183372 (fdft1)
Prenyltransferases [BR:
lroh01006
]
Terpene biosynthesis
Squalene/phytoene synthase
127183372 (fdft1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Octopine_DH
GST_C_8
Motif
Other DBs
NCBI-GeneID:
127183372
NCBI-ProteinID:
XP_050995346
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Position
20:complement(32232472..32246927)
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AA seq
448 aa
AA seq
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MAGVGCKSAVSFSVLKRSFSLRGSPRSVLTGGRRSAQEGRLVARPFHPLRTHRHPAYVCF
SCQDSMSETLRTCYAYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALDTVEDDMSIPL
ETKVPLLHDFHTFLYQPEWCFTESKEKDRQVLEDFPTISVEFRNLGQEYRDVITDICHRM
GVGMAEFLEKKVSSMMEWDKYCHYVAGLVGIGLSRLFSASQLEDPEVGRDTELANSMGLF
LQKTNIIRDYLEDQQEGRAFWPQEAWSQFAARLEDFAHPQHLSSALSCLNLLVTDALRHV
PDVIAYLSRLRNQSVFNFCAIPQVMAIATLSACYNNPQVFQGVVKIRKGQAVTLMMQATN
MDAVQSIIAQYSQEILQKVSVTDPSREKTLRILNVICEKSLSPAALSSRAHHISPVYVSA
AMLLAALSWQYLNATAGQPPGGADMQGH
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagtcggctgtaagagcgccgtgtcgttctccgtgctcaagcgctcgttctcc
ctgcgcggctccccgcgatcagtgctcactggcgggcggaggagtgcgcaggaagggcgg
ctggtggcccgtccttttcacccgctccggactcaccgacaccccgcgtatgtgtgtttc
tcctgccaggactccatgagcgaaaccctgcggacctgctatgcctatctgaaccagacc
agccggagcttcgcagcggtgatccaggccctggacggagagctgcggcatgccgtgtgt
attttctacctggttctgcgagctctggacacagtggaggatgacatgagcatcccgctg
gagacgaaggtcccgttgctgcatgacttccacacgttcctctatcagcccgaatggtgc
ttcaccgagagcaaagagaaagaccggcaggtgctggaggatttccccacgatttcagtg
gagttcaggaatttggggcaggagtatcgtgacgtgattacagacatttgtcaccggatg
ggtgtaggaatggccgaattcctggagaagaaagtttcttccatgatggaatgggacaag
tactgtcattatgtggcgggtctggtggggatcggactgtcccggctgttctcggcatcc
cagctggaggaccctgaggtgggccgggacacggagctggcgaactccatgggtctgttc
ctccagaagaccaacatcatcagagactatctggaggaccagcaggagggacgggccttc
tggccgcaggaggcctggagtcagttcgcggcccgtctggaggatttcgctcatcctcag
cacctgagctccgccctgtcctgcctcaacctgctggtgaccgacgccctccgccacgtc
ccggacgtcatcgcgtacctgtctcgtctccgcaaccagagcgtcttcaacttctgtgcc
attcctcaggtgatggcgatagcgactctgtcggcatgttacaacaatcctcaggtgttt
cagggtgtggtgaaaatccggaagggtcaggcggtgacgctcatgatgcaggccacaaac
atggacgccgtccagagcatcatcgcacagtacagtcaggagatcctgcagaaggtttcc
gtcacggacccgtcccgggagaagacgctgcgtattctgaatgtcatctgtgagaagagc
ctgtctccagccgcgctgtcgtcccgcgcgcaccacatctccccggtctacgtctcggcc
gctatgctgttagcggcgctcagctggcagtacctgaacgccacggcggggcagccacca
gggggcgcagacatgcagggacactga
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