Furfurilactobacillus rossiae: LROSL1_0720
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Entry
LROSL1_0720 CDS
T06823
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lros
Furfurilactobacillus rossiae
Pathway
lros03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lros00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LROSL1_0720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lros03400
]
LROSL1_0720
Enzymes [BR:
lros01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LROSL1_0720
DNA repair and recombination proteins [BR:
lros03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LROSL1_0720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
CarD_TRCF_RID
DEAD
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
Y_Y_Y
CdvA
Motif
Other DBs
NCBI-ProteinID:
QLE63540
LinkDB
All DBs
Position
813873..817412
Genome browser
AA seq
1179 aa
AA seq
DB search
MEIQDFLRRAPEYQQIVAATNMGRQLVTGINGSARTLLMATMFMDQQQTQLMVTDTAFHA
GQLVNDLQNLLPDNQVFNFPAEEMLATEIATSSPESRAERVQALHALQSDQPVMVVTDLA
GLRRFLPQPADFKQASLVIETGKNYDMTNLQTQLHQMGYGHEQLVARPGDYAIRGSIMDI
YPLDADYPVRIDFFDTEVDSLRTFDPENQRSIDTIDNVTVLPATEFLVSDAQLAAGKKAL
QKQVNKQAESLTGEDKKALLAHFSVLLADDATPSATPELGLYANLFYDQTAGLMDYLPKD
ALVLVDDYGRLLDTDRRIDEDEANWITDRLRTHEMLPDQDLSLDFRTVMREVKRPQVFFS
LFQKGMGNVRFNKLTNFVSREMQKFFGQLPVLKGEVERWQKQKQTVVIMVNNEDRISKVN
DTLHDFGISASLDKATNLTPESVQVVPATLQSGFELPSANLVVITETEMFAKVTKKRARR
QTLANAERLRSYTELKPGDYVVHVNHGIGRFEGMQTMEVDGVHQDYITIDYQNNAKIFIP
VTQLNLIQKYVSSEDKTPRINKLGGTEWAKTKSSVARKIEDIADELVDLYAAREAQKGHA
FPKDDAYQEEFEAAFPYVETPDQLRSTDEIKHDMERNKPMDRLLVGDVGFGKTEVALRAA
FKAIEDGRQVAFLVPTTILAQQHYDTMVSRFEGFPIKIGILSRFDTPSQMRATLAELKAG
DIDIVVGTHRLLSKDVEFKDLGLLLVDEEQRFGVKHKERIKQMRSSVDVLTLTATPIPRT
LNMSMIGVRDLSVIETPPANRYPIQTYVMESSPAALQDGIAREMARGGQVFYLHNRVDDI
ERVVEQIRQLVPEARVAYIHGKMSENQLESVLYDFIRGEYDVLVTTTIIETGVDIPNVNT
LFVENADRMGLSQLYQLRGRIGRSNRVAYAYFTYQPNKVLTEESEKRLEAIRDFTELGSG
FKIAMRDLSIRGAGNLLGQQQHGFIDSVGYDLYTQMLSQAVAKKRGKEVKVRSDTEIELG
VEAYLPATYIEDQRQKIEIYKRIRELENEDQYVEVDEDLIDRFGDYPTEVANLLAIGHLK
MVADQALISKIRRVDDNINVTLSKQGSVLFNGEDIFKALASTKLRATVSDEDGKMMVKLV
IQPKMTEAQWLASLSAFVSALADRAEELATTASTAERKE
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atggaaattcaggattttttgcgccgtgcgcccgaatatcagcaaattgttgccgcgacc
aacatgggacgacaattagtaactggtattaacggctcagcgcggacactgctgatggcg
accatgttcatggaccagcaacagacacaactaatggtgacagacacggcatttcatgct
ggtcagcttgtgaatgatttacaaaatttattgccggacaaccaggtttttaattttcct
gcagaagaaatgttggctacagaaattgcgaccagttcaccagaatcacgggctgaacgt
gtgcaggcactgcatgcgttgcaatctgatcaaccggttatggtagtaacggatctagct
ggattacgccgtttcttaccacaacctgctgattttaagcaggccagtttggtaattgaa
accggcaaaaactatgacatgactaacttgcaaacgcagttacaccaaatgggttacggt
catgagcagttagtggcacgacctggtgattacgcgattcgtggttcgattatggatatt
tacccattggacgcggattatccagtgcggattgatttctttgatactgaagtggattct
ttgcggacgtttgatccagaaaaccaacgtagtattgatacgattgataacgtgacggtt
ttgccggcaactgaattcttggtaagtgatgcgcaattagctgctggtaagaaagcattg
caaaagcaagttaacaaacaggccgaatcgttgactggcgaagataagaaagctttgcta
gctcattttagtgtgctactagctgatgatgcgaccccgagtgccacgcctgaattaggc
ttgtacgcaaatttattctacgatcaaactgctgggctaatggattacttgcccaaagat
gcactagtattggttgatgactatggtcgtttactagacactgatcgacgtatcgatgag
gatgaggccaactggatcaccgaccgtttgcgaacgcacgaaatgttacctgaccaagac
ttgagtttagatttccgaaccgtaatgcgggaggttaaacggccacaagtcttcttctca
ctgttccagaaggggatgggcaatgttcgtttcaacaagctgactaattttgtcagccgt
gaaatgcaaaagtttttcggtcagctgcccgtgttaaagggcgaagttgaacgttggcaa
aagcagaagcagacggttgtcattatggtcaacaatgaagatcgaatcagcaaggtcaac
gatacgcttcacgactttggtatttccgcttcgttggataaggcaactaacttgacaccg
gaaagtgtccaggtcgtgcctgctacattgcaaagtgggtttgaattgccaagtgctaac
ttggtggtcattacggaaactgaaatgtttgccaaggtgaccaaaaaacgtgcgcgtcgg
cagactttagctaacgctgagcggttgcgtagttacacggaattgaagcctggtgactac
gtggttcacgtcaaccacggaattggtcgttttgagggcatgcagaccatggaagtggat
ggtgtgcaccaggattacattacgattgattatcaaaacaatgcgaagatctttattccg
gtcacccagttaaatctgattcagaaatatgtttcatctgaagacaaaactccgcgcatc
aataaacttggcggaaccgagtgggccaagactaaaagcagtgtggctcgcaagattgag
gacattgctgatgaactggtggatctttacgccgctcgtgaagcgcaaaaaggccatgct
ttcccgaaggacgatgcctatcaagaggagtttgaagcggccttcccttatgtggaaaca
ccggaccagcttagaagtacggatgaaattaagcatgatatggaacgtaacaagccaatg
gatcgtctgttagttggggatgttggttttggtaaaacggaggttgcactccgggctgcg
tttaaagccattgaagatggacgtcaggtagcctttttggtaccaaccaccattttggct
caacagcattacgataccatggtgtcacgatttgaaggttttccgattaaaattggcatt
ctgtcacggtttgatacgccaagccagatgcgggcaaccttggctgagttaaaagccggc
gatattgatatcgttgtcgggacgcaccgtttgttatcaaaagacgttgaattcaaggat
cttggcttattactagtcgatgaagagcagcgctttggggtcaaacataaggaacgaatc
aagcaaatgcgttcttcagtggacgtcttgacactgacggccacaccaattccacgaact
ctgaatatgtcaatgattggtgtgcgagacttatcagttatcgaaacaccgccagccaat
cgttacccgatccaaacgtacgtgatggaatctagtccggctgcgttgcaggatggcatt
gcccgtgaaatggctcgcggtggtcaagtgttttatctgcataatcgtgttgacgacatc
gagcgggtggttgaacaaattcgccagctggtgcccgaagcgcgggttgcttatattcat
ggtaagatgagtgaaaaccagctggaaagtgtgctctacgacttcattcgtggtgaatat
gatgtgctggtaacgacaacgattatcgaaactggtgtggatattcctaacgttaatacg
ttgtttgtggaaaacgccgacagaatgggcttatctcaactttatcagttgcgtggtcgg
attggtcggagtaatcgtgtggcatatgcgtatttcacttatcaaccgaataaggtgctg
acagaagaaagtgaaaaacggcttgaggcgattcgagatttcactgagttaggttctgga
tttaagattgccatgcgggatctttcgattcgtggtgccggtaatttacttggtcagcag
caacatgggtttattgactccgtcggttatgatctgtacacccagatgttatcgcaggca
gttgctaagaagcgcggtaaagaagtgaaggttcgttctgataccgagatcgaactaggt
gttgaggcgtacctgccagcaacttacattgaagatcaacgtcagaaaattgaaatttac
aaacggattcgtgaattggaaaatgaagaccagtacgtggaagttgatgaagacttgatc
gatcggtttggtgattacccaaccgaggttgccaatctcttagctatcgggcaccttaag
atggtggctgatcaagctctaattagtaaaattcggcgtgtggatgacaacatcaatgtg
actttgtccaaacaagggtctgtgttgttcaatggtgaagatatctttaaggcgttggct
agcactaaattacgggcgacagtcagtgatgaagatggtaagatgatggtcaaacttgtg
attcaaccgaaaatgaccgaagctcagtggttagcatctttgtccgcatttgtcagtgct
ctggcggatagggcagaagaattagctactacggcatcaacggctgaacgaaaggagtaa
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