Furfurilactobacillus rossiae: LROSL1_1879
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Entry
LROSL1_1879 CDS
T06823
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lros
Furfurilactobacillus rossiae
Pathway
lros03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lros00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LROSL1_1879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lros03019
]
LROSL1_1879
03016 Transfer RNA biogenesis [BR:
lros03016
]
LROSL1_1879
Enzymes [BR:
lros01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LROSL1_1879
Messenger RNA biogenesis [BR:
lros03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LROSL1_1879
Transfer RNA biogenesis [BR:
lros03016
]
Prokaryotic type
tRNA degradation factors
LROSL1_1879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
S1CSD-TOTE-2
S1_RRP5
RNase_II_C_S1
DUF4444
Motif
Other DBs
NCBI-ProteinID:
QLE64695
LinkDB
All DBs
Position
complement(2022195..2024561)
Genome browser
AA seq
788 aa
AA seq
DB search
MTESNLQQQILTFLNANQEGSFTAAEIGTALKQPEAEFTLSVQALAGLERAGKVAVTDTG
KWAIVKVAAGLSGTFHGNDKGFGFVAYDDEQPDAYINPDHTKHAMTGDMVEMKILRPSKP
GSDRGPEGEVTKVTERHYTQIVGEFRSKRDAKLPSVIGEVLLKDKKLGSYTFDVLDGGIH
PVDGEVVTADVTGYPTDLNPQLLSGVATKVIGNADEPGIDILQIVYAHDVPSEFPQEVLD
EANAIPDTVQEADKAGRVDITDQPLVTIDSIESKDLDDAVVAWKLPNGNYHLGVSIADVS
YYVKEGSALDKEAYKRGTSVYLTDRVIPMLPKRLSNGICSLNEGVERLSMTCDMEIDGTG
KVVSHKIYPSLMKSHARMTYKGVNKILEAHDAKTMERYDSLVGMFETMAELHKILVKKRH
QRGAIDFDAPEAKIIVDAEGHPTDIELRERGLAERMIESFMLAANETVAEHYDRMHVPFL
YRVHETPDGDRVKSFFDLLNVFGINAKGDPNNLKPKMLQSVLKEVAGTPEEQMVQTMMLR
SMKQAKYSDQPLGHFGLGAEYYTHFTSPIRRYPDDMVHRMIRWYAANGDSNAAKAKYADK
LPQIAQDTSERERRSIDTERATDDMKKAEYMADHVGEDFDAVVSSVLKFGMFVELPNTVE
GLIHISNMKDDFYDYDESHLALIGERHHHIFQIGQPIRVHLEKVDKDAAAVDFTIVDPRT
APTTDIRVAHDNHGNGGRRGNGNRGNRNFHNNAKRDEKNGGKKFNHYQSNRNKAGRSGKT
NFHGDRKK
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaagcaatttacaacaacaaattttgacgtttttaaacgccaatcaggagggg
tcgtttacagcggccgaaatcggcactgcacttaaacaaccagaagcggagttcacgttg
agcgtgcaggcacttgctgggttggaacgtgccggcaaagtggccgttacggacacaggt
aagtgggccattgttaaagtggcagctgggttatcaggaactttccatgggaacgacaag
gggtttggtttcgtcgcatatgatgacgaacaaccagatgcttacatcaatccagatcat
accaaacacgcaatgacgggtgacatggttgagatgaagattttacgaccgtctaaaccg
gggtctgatcgggggcctgaaggtgaagtaacaaaagtaactgagcgtcactacacacaa
atcgttggtgagtttaggtccaaacgtgacgccaagttacctagtgttattggtgaagtg
ctccttaaagacaaaaaactcggcagttatacgtttgatgtgctcgacggcggcattcat
ccagtggatggagaagttgtcacggccgatgttaccggttatccaacagatctcaatcca
cagttgctaagtggtgtggccacgaaggtgattgggaacgctgacgaaccgggtatcgac
attctgcaaatcgtttacgctcatgatgtgccttccgaatttccgcaggaggtactggat
gaagcaaatgccattcctgatacggtgcaggaagctgacaaggctggtcgagttgacatt
accgatcaaccgttagttaccatcgatagtattgaaagtaaggacttggatgacgcggtc
gttgcgtggaagttgcctaatggtaattatcatttgggcgtatccattgccgacgttagt
tactacgtgaaggaaggttctgcgcttgataaagaagcctacaaacgtggaacttctgtt
tatttgaccgaccgcgttattccgatgctgcccaaacgtttatcaaacggcatttgttca
ctgaacgagggtgttgaacgtttatcaatgacctgtgacatggaaattgatggcactggt
aaggtcgttagtcataagatttatcctagcttgatgaagagtcatgcgcgaatgacttat
aagggtgttaataagattttggaagcccatgatgccaaaaccatggaacgttatgacagc
cttgttggtatgtttgaaacgatggcagaactacacaagatcctggttaagaaacgccac
caacgtggtgcaattgacttcgatgctccagaagcaaagatcattgttgacgctgaaggg
catccaaccgatatcgagctacgtgaacgtggtttggcagaacggatgattgaatccttt
atgctggctgctaatgaaaccgtcgctgaacattatgaccggatgcacgtaccgttctta
taccgtgtccatgaaacgccagatggtgatcgggtaaagagtttctttgacttgttgaat
gtctttggcattaatgccaagggtgatccaaacaacctgaaaccgaagatgttacagtcc
gtgttaaaggaagttgctggaacacctgaagagcagatggttcagaccatgatgcttcgt
tctatgaaacaggcgaaatattcagatcaaccactaggacactttggtcttggcgctgaa
tactacacgcatttcacgtcaccaatccgacgttatccagatgacatggttcaccggatg
attcgctggtatgcagcaaacggtgatagtaatgctgctaaggcaaaatacgcagataag
ctaccgcagattgctcaagatacctctgaacgcgagcgtcgttcaatcgatactgagcga
gctaccgacgacatgaagaaagccgaatacatggctgatcacgttggtgaagactttgat
gccgttgtcagttccgttttgaagtttgggatgtttgtggaattaccaaacacggttgaa
ggacttattcacatttctaacatgaaggatgacttttacgattacgatgaaagccattta
gcattgatcggtgaacggcatcatcacatcttccaaattggccagccaatcagggttcat
ttggagaaggtcgataaggatgctgccgcagtggactttaccattgtggatccacggact
gcgccaacgacagacattcgtgttgcccatgataatcatggcaatggtggccgtcgtgga
aacggtaaccgtggtaatcgcaacttccataacaatgccaaacgtgatgagaaaaatggt
ggtaaaaagtttaaccactatcaaagtaatcgcaataaggctggtcgcagtggtaagacc
aattttcacggtgaccggaaaaagtaa
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