Limosilactobacillus reuteri TD1: N134_01275
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Entry
N134_01275 CDS
T02745
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lrr
Limosilactobacillus reuteri TD1
Pathway
lrr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N134_01275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrr03019
]
N134_01275
03009 Ribosome biogenesis [BR:
lrr03009
]
N134_01275
Enzymes [BR:
lrr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N134_01275
Messenger RNA biogenesis [BR:
lrr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N134_01275
Ribosome biogenesis [BR:
lrr03009
]
Prokaryotic type
rRNA helicases
N134_01275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
LidA_Long_CC
Cas3-like_C_2
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AGR63705
UniProt:
S5NMJ7
LinkDB
All DBs
Position
302959..304452
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AA seq
497 aa
AA seq
DB search
MKFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPII
ENVDTENPNIQAIIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLKQHP
QILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQTLLF
SATMPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLIDVQDPD
LTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDVAA
RGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEIEKLTRV
RMLPLKPPTAEEAFKGQVASAFNDIDELIAQDSTDRYEEAAEKLLETHNATDLVAALLNN
MTKEAASEVPVKITPERPLPRRNKRNNRNGNRNNAHGGNHYRRKNFRRHQHGGHRNDNHG
KSHSSRHAFNIRHRKED
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttagtgaattaggcttatccgatagcctattaaaagcaatcaaacggagcgga
tacgaagaagcaacaccaattcaagaacaaacgattccaatggttcttgagggtaaggat
gttattggtcaagcacagactggaactggtaagacggctgcttttgggttgccaattatt
gaaaacgttgatactgaaaatccaaatattcaggcaattatcatttcgccaacacgtgaa
ttagcgatccagactcaagaagaactttatcgtcttggtaaggataaacatgttcgcgtg
caagtagtatatggtggggcagatattcggcgccaaattaagagcttgaaacaacacccg
caaattcttgttgggactcctggacggttacgggaccatattaaccgtcatacagttaaa
cttgaccacattaagacccttgtcctcgatgaagcagatgaaatgctaaacatgggattc
ttagaagatattgaatccatcatcaaggaaacaccggatgatcggcaaacattgctcttt
tcagcaaccatgccaccagaaatcaagcgaattggggttcaatttatgtctgatccggaa
actgtgcggatcaaggccaaggaattgactactgacttagttgatcagtactatgttcgc
gcccgtgactatgaaaagtttgacatcatgacccgcttgattgatgttcaagatcctgac
ttaacaattgtctttgggcggacaaagcgacgggtagatgaattgtcgaagggcttgatt
gcgcgtggctacaatgcagctggtatccatggagatcttactcaggataagcgttctaag
atcatgtggaagtttaagaacaatgaacttgatatcttagtcgcaacggatgtggctgcc
cggggcttagacatttccggggttacgcatgtttataattacgatattccatctgaccca
gacagctatgttcaccggattggccgaacagggcgggccggacatcacggggtatcctta
acctttgttactccaaatgagatggactaccttcatgagattgaaaaattaacccgggta
cggatgttgccactcaagccaccaacagctgaagaggcatttaagggtcaagttgcatca
gcctttaatgatatcgatgaattaatcgcgcaggattcaactgatcgttatgaagaagcc
gctgaaaagctattagaaactcataatgcaactgacctggtagcagcattgttaaataac
atgacgaaggaagcggcgagtgaggttcccgttaagattacccctgagcgtccccttcca
cggcgtaacaagcgaaataaccgtaatggcaaccgaaataatgcgcatggtggcaaccac
taccggcgtaagaatttccgccgtcaccaacatggtggtcaccggaatgataaccatgga
aagagccattccagccggcatgcatttaatatccgtcatcgaaaagaagattaa
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