Limosilactobacillus reuteri TD1: N134_01350
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Entry
N134_01350 CDS
T02745
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lrr
Limosilactobacillus reuteri TD1
Pathway
lrr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lrr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N134_01350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrr03400
]
N134_01350
Enzymes [BR:
lrr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N134_01350
DNA repair and recombination proteins [BR:
lrr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
N134_01350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
SNF2-rel_dom
UB2H
RecG_dom3_C
ERCC3_RAD25_C
CdvA
Motif
Other DBs
NCBI-ProteinID:
AGR63719
UniProt:
S5N9W4
LinkDB
All DBs
Position
331453..334992
Genome browser
AA seq
1179 aa
AA seq
DB search
MVQIENLIEKTPSFKQITADLQPKNHQLITGISGSARTELLSALSKEGQRPILVVTDTIS
HMQELASDLENLLPANRVYQFPVEEVLAAEVATSSPNYRLQRVLALNALINNEPAVVVAS
AAGLRRNIISPEYFAQSSLKIKTGGEVDPAKIRQQLSAMGYQYQKMVLRPGDFAIRGSII
DIYALNTDNPVRIDLFDTEVDSLRYFDASTQRSIDNVEEVQILPATDFIIPATEFSRVYE
ALDAEYKKVVKELSADDADIKQQVANRFEPLLNALKNQHLPNELLEFSNLVYPAKHSLFD
YLPDDGTIYFDDLTRIKQFAKQMTQEDAGWFKDKVAHHQLTAIPDLSNDVSAIIKKDLHP
QIYGALFKKGLGNIKLSQITDLKSRTMQRFFGQMPLLKAELQRWIDQGQTVVLMANSPER
RKQIAQTLADFDITATETELTNIKPNVVQIVAANLNNGFEMPLAGLVVITESEMFKQVKK
VHHRPQKLANAERLKNYTDLKPGDYVVHVNHGIGIFSGIKTMEVDHVHQDYMIINYRDNA
QIYVPVTQLNLVQKYVSSESKTPHINKLGGNEWAKTKRRVSSKIEDIADELVDLYAKREA
EKGYAFPKDDYLQKQFDANFPYNETRDQLRSIDEIKEDMEKPKPMDRLLVGDVGYGKTEV
AMRAIFKAVTGGKQVAFLVPTTVLAQQHYNTLMRRFEGFPINIALMSRFKTPKELKETEA
GLKDGSVDVVVGTHRILSKDVEFKDLGLLIVDEEQRFGVKHKEKLKQLKNNVDVLTLTAT
PIPRTLHMSMLGVRDLSVLETPPAGRYPIQTYVMEQNSSAIRDGIIREMQRGGQVYYLHN
RVHDIEETVAWLQELVPEARIGYINGQMSENELETVLYEFIQGNYDVLVTTSIIETGVDI
PNANTLFVENADRMGLAQLYQIRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFT
ELGSGFKIAMRDLAIRGAGNLLGKQQHGFIDSVGYDLYSAMLSDAVAKKQGKKQTIHSDA
EVELGVEAYLPTDYIADQRQKIELYKTIRQAKTDEEVIDIQGDLIDRFGDYPAPVGTLLL
VSQLKNHADLAMIAEIKRQRENINIKFTERASRLIKAPTIIKELANTRFKATIGEDDQQL
TIRLVIQPKMTTDDWLHQLLQFVTALGNVIQADEKGAEK
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atggtgcaaatagaaaatttaatcgagaagacgccatcatttaaacaaattacggctgac
ctccaacccaagaaccatcaattaataacggggatttctggatcagcgcgaactgaattg
ctaagtgctctttctaaagaagggcagcgaccaattctagtagtgaccgacacgatttcc
catatgcaggaattagctagtgacttagagaacctccttcctgccaatcgtgtttatcag
tttccggttgaagaggttttagcagcggaagtagcaactagttctcctaactatcgtctt
cagcgggtactggccttgaatgcgttgattaataacgaaccggcagttgtggttgcgtct
gctgcggggttacggcgcaatattatttcaccggaatactttgctcagtcctcgttaaaa
attaagactggcggggaagtggatccagctaaaatccggcagcagttaagcgcaatgggg
taccaatatcaaaaaatggtcttgcgtcctggtgattttgcaattcgtggatcgattatt
gatatctatgccttaaatactgataatccggttagaattgatctttttgatacagaagtt
gattcactccgttattttgatgctagtacccagcggagtattgacaacgttgaagaagtt
cagatactgccggcaacagattttattatcccagcgactgaattttcgcgggtgtatgaa
gcccttgatgctgaatataaaaaggtagtgaaggagttaagtgctgacgatgctgatatt
aaacagcaggtggctaaccgctttgaaccattattgaacgcgcttaagaaccagcatttg
cctaatgaacttttagaatttagcaacctagtttatccggctaagcattccttatttgat
tatcttcctgatgatgggacgatttactttgatgacctgacgcggataaagcaatttgcc
aaacagatgacccaggaagatgcaggctggtttaaagataaggttgcccaccaccaatta
acggctattccagatcttagcaatgacgtatcggccataataaaaaaagacctgcatccg
caaatttatggcgccctatttaaaaaaggtctcggtaatattaaacttagccaaattacc
gacttaaaaagcagaaccatgcaacgtttctttgggcaaatgccactgctgaaagccgaa
cttcaacggtggattgatcaagggcaaacagtagtactgatggctaatagtccagaacga
cgaaagcaaattgcccaaacacttgctgactttgatatcactgcgacagaaactgaattg
acaaatatcaagccgaatgttgtgcaaattgttgctgctaacttaaacaatggatttgaa
atgccgcttgctgggctggttgttattacagaaagcgagatgtttaagcaggtaaaaaag
gttcatcatcgtccacaaaaacttgccaatgccgaacgattaaaaaattatactgacctt
aaaccgggtgactatgtagttcatgtcaatcatggaattgggatttttagtggaattaag
acgatggaagttgatcatgttcaccaagactacatgatcataaattaccgggataacgct
cagatatatgtgccagtaactcagctaaatcttgtccaaaagtatgtctcatcagaatcg
aagaccccgcatatcaacaagcttggcggtaacgaatgggcaaagactaagcgacgcgtt
tcttcaaaaattgaagatatcgctgatgaattagttgacttatatgctaagcgagaagcg
gagaaggggtatgcttttccgaaagacgattatctccaaaaacaatttgatgctaatttc
ccatataatgagactcgtgatcagttgcggagtattgatgaaattaaagaagatatggaa
aagccaaagccgatggatcgcctattggtgggggatgtcggctatggtaaaaccgaagtt
gcaatgcgggcaatttttaaggcagtcactggaggaaagcaggttgccttccttgtacca
acaactgttcttgcccagcaacattacaacaccctcatgcgccggtttgaaggtttccca
atcaacattgccttgatgtcacgtttcaagacgccaaaagagctaaaagagacagaagca
gggttaaaggatggaagcgttgatgttgttgttgggacccaccgaatcctatcaaaggat
gttgaatttaaggaccttggcttgttaattgttgatgaggaacagcgttttggggtaaaa
cataaggaaaaactaaaacaattaaaaaataatgttgatgttttaaccttaacggcaacc
ccgattccccgaaccttgcatatgtcaatgctgggcgtacgagacttatcagttcttgaa
acaccgcctgctggtcgttacccaatccaaacctatgtaatggagcaaaatagtagtgcg
attcgcgatgggattattcgtgaaatgcaacgtggcggacaggtgtattaccttcataat
cgcgttcatgacattgaagagacagtggcatggttacaagaacttgttcctgaagcccga
attggctatattaatggtcagatgagtgaaaatgaactggagacagtcctctatgagttt
attcaaggaaattacgatgtattagtgactacctctattattgaaacgggggttgatatc
ccgaatgcgaacaccctctttgttgaaaatgctgatcggatggggttagcacagctatat
cagattcgtggacggattggtcgtagtaatcgggtggcttatgcttactttatgtatcag
cctaataaggtcctaaccgaattaggagaaaagcggctagctgcaattcgtgattttacc
gagttggggtctggatttaagattgcgatgcgggaccttgctattcggggagctggaaac
ctcttgggaaaacagcagcatggatttatcgattctgttggttatgacctatattcggcg
atgcttagtgatgcggtagctaaaaagcagggtaagaaacaaactattcactccgatgcg
gaagttgagttaggggttgaagcttacctaccaacagattatattgcagatcaacggcaa
aagatcgaattatataagacaattcgccaggctaagacagatgaagaagttattgatatt
caaggtgacttgattgatcggtttggcgattacccggcaccggttgggacgctgttgctt
gtaagccaattgaagaatcatgctgatctggcaatgattgctgagattaagcggcaacgg
gagaatattaatattaagtttaccgaacgtgctagccgcttaattaaagcccccacaata
attaaggagctagctaatacgcggttcaaagcaacaattggtgaggacgatcagcaacta
acgattcggctggttattcaacctaaaatgactactgatgattggcttcaccagctacta
caatttgtaacggctttaggaaacgttattcaagccgatgaaaaaggagcggaaaaatga
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