Limosilactobacillus reuteri TD1: N134_02790
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Entry
N134_02790 CDS
T02745
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lrr
Limosilactobacillus reuteri TD1
Brite
KEGG Orthology (KO) [BR:
lrr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrr03019
]
N134_02790
03009 Ribosome biogenesis [BR:
lrr03009
]
N134_02790
Enzymes [BR:
lrr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N134_02790
Messenger RNA biogenesis [BR:
lrr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N134_02790
Ribosome biogenesis [BR:
lrr03009
]
Prokaryotic type
rRNA helicases
N134_02790
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
StrH_N
CMS1
Motif
Other DBs
NCBI-ProteinID:
AGR63960
LinkDB
All DBs
Position
632235..633638
Genome browser
AA seq
467 aa
AA seq
DB search
MQTKNEREIAMSDKKFADFQLQPYLLTAIQKINFRQPTPVQQRVIPVIMAGRSVVGQSAT
GSGKTHAFLLPIFSKINPEDQTVQAVITTPSRELAYQIYNAAKQLNKYAPHPLTIHNYVG
GTDKQHQVDQLSRKQPQLVIGTPGRVLDLIKSQALDIHTAKMFVVDEADMTLDMGFLHEV
DQIASHFPDDLQMMVFSATIPQKLRPFLKKYMENPVVEEIPTEAVINPDVDNWLMSTKGQ
DRNQLIYRLLTLGEPYLALVFANTKERAVELTQYLENQGLKVAMIHGGLEARRRKRTMRQ
IRDLEYQYVVATDLAARGIDIDGVSLVINDDLPTDLEYFVHRVGRTGRNGMKGTAITLYE
PAEDDLIAKLEERGVKFVPKELKNGQLVTTHDRNRRKHYKRRQNELDPSMKGYVKKTKKK
VKPGYKKRIKKAIKEDEQQKRKLELRHKIRKAKRARQKQHRRERNAR
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaccaaaaatgaaagggaaatagctatgagtgataaaaaatttgctgattttcag
ttacaaccttatctgttaacagcaattcaaaaaattaattttcgtcaaccaacaccggtc
caacaacgggtaataccagtgattatggctggacgaagtgttgtggggcaatcagcaact
ggtagtggaaaaacacatgccttcctcttaccgattttttcaaagatcaatccagaagac
caaaccgttcaagcagtaattacaactcctagtcgggaattagcataccaaatttataat
gcagcaaagcaacttaataagtatgctcctcatcctcttaccattcacaattatgttggt
ggtacagacaagcagcatcaagttgaccaattaagtcgaaaacagcctcaattggtcatt
ggaactccgggaagagtattagacttaatcaaaagtcaggcattggatattcacacagca
aaaatgtttgtggtggatgaagcggacatgaccctggatatgggattcttacatgaagtt
gaccaaattgccagtcattttcctgatgaccttcaaatgatggttttctcagcaacgatt
ccgcagaaactgcgcccattcttaaaaaagtatatggaaaatccagtagttgaagagatt
cctactgaagcagtaattaatccggatgttgataattggttaatgtcaactaaggggcag
gatcgtaatcagctaatttatcgtttgttgactcttggagaaccatatcttgcgttggta
tttgctaatacaaaagaacgagcagttgaattaacccagtatttagaaaatcaagggctc
aaagtagcaatgattcatgggggactagaagcccgtcgtcgtaaacggacaatgcggcaa
attcgtgatcttgaatatcaatatgttgtagcaactgatctagcagctcgtggaattgat
attgatggagtatcactagtaatcaatgacgacttgccaactgatcttgaatattttgtt
catcgggttggtcgtaccgggcgaaatgggatgaaaggaacagctattaccttatatgaa
ccggcagaagatgatttaattgctaagcttgaggagcggggagttaaatttgtaccaaaa
gaattaaagaatggtcaactagtaactacccatgaccgtaatcgccggaagcattataag
cggcggcaaaatgaacttgatccgtcaatgaaggggtacgtaaaaaagactaagaagaag
gttaaacctggttataagaaacgaattaaaaaggcgattaaagaagacgaacagcaaaaa
cgaaagctagaattacggcataaaattcggaaagctaagcgtgcacgacaaaaacaacat
cgccgtgaacgaaatgcccgttga
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