Limosilactobacillus reuteri TD1: N134_04405
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Entry
N134_04405 CDS
T02745
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lrr
Limosilactobacillus reuteri TD1
Pathway
lrr03030
DNA replication
lrr03430
Mismatch repair
lrr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lrr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N134_04405
03430 Mismatch repair
N134_04405
03440 Homologous recombination
N134_04405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lrr03032
]
N134_04405
03400 DNA repair and recombination proteins [BR:
lrr03400
]
N134_04405
Enzymes [BR:
lrr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
N134_04405
DNA replication proteins [BR:
lrr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
N134_04405
DNA repair and recombination proteins [BR:
lrr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
N134_04405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
SSB
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AGR64158
UniProt:
S5NAT8
LinkDB
All DBs
Position
933388..936735
Genome browser
AA seq
1115 aa
AA seq
DB search
MDFTPLDVKSSYSLLKSPTRISDLVTTAKERGYKALALTDENVLYGAVEFYNAAKKAGIK
PILGLRLVVALNETDGTKLDLVFLAKNQRGYQHLMDLSTLQQTRKDKKIPLTIAQISPLL
GELFIIIPPQSTVFSILAQPTSILTELANLGDDDSVLLGVNSRLDDVQIDTLQQLSKQLS
LPLVGTSPVDYLNANDLFASRVLQAIDAGVELKDPTIEAGRRGQHYLHSKEQIVQDYNAK
GLSAAAQKTVEVAALCNVELQFRAPVLPHFKNQAGISSQQYLRSLCIQGLKKRRVAPGKT
IQQYQERLAMELKVIHEMGFDDYFLIVWDVMNFAHQQKITTDPGRGSAAGSLVAYALAIT
EVDPLQYDLLFERFLNPERAQMPDIDLDIPDNRRDEVLQYVHQKYGHQRVAQIITFGTLA
AKQVVRDVSRVFNLPRYDMQRLIDALPHGLHVTLKDALKESQQLKNLLDDNPKFRLLIQV
AQQLEGLPRHYSIHAAGIVLSEQPLHEIVPLQDGSDGLLMTQFAKDTVEALGLLKMDFLG
LKNLSIMDNTLQMIRQEDPNFDLQKINFNDSLTLQLFQRGKTEGIFQFESSGIRNVLVNL
HPTNFEDIVAVNALYRPGPMENIPHFTARKAGKEKITYPAPSLEKILGPTYGILVYQEQV
MQLASVMAGFTLGEADLLRRAMSKKKKATMEDMRTKFIAGATEHGYSAQVAHQVFEYIDR
FANYGFNRSHAVAYSMMAFEMAYLKVHYPTAFFTALMNAETNIEKLKRHVGDAKQLGVKI
SGPRINISESSFLLHDGTVYFGFSAIKGVRRDFVAAILEERQENGKFTDLRNFITRIPER
WQKQELIEPLIYSGAFDNMGYNRAEMIDALPKLISGIELFAGFASFDDPALQTAIDQRNE
FPLLTRLTKENEYLGVYLSGHPVTQYYQLGQQLHATKIDDLYPNSEATIIVLTNHVKTIY
TKREHREMAFVNGTDETGAVDITVFPKQYQQFKEQLETNKILIVRGRVEYREGRGLQLVA
NQLQDVKKVQQERPSQRWVLRILPSLDTEMVHRELNNIFNEYHGSIPVLLFYPANDKKIL
LDQKRWLKNSQKAKKALVAILGQENVVLQQLNSNH
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
gtggattttacgcccttagatgttaagagtagttatagtttgctaaaaagtccaacccgg
atttctgacctagttacaacggctaaggaacgagggtataaggcattagcgttaacagac
gaaaatgttttatatggggctgtcgaattttataatgcagctaaaaaagcaggaattaaa
cccattctcggcttgcggctggtagttgcattaaatgagacggatggtaccaagctagat
ttagtatttctagctaagaatcaacgagggtaccagcatctgatggacctatcgacgctt
cagcaaacacgaaaagataaaaaaatacctttaacgattgcacaaattagtcctttattg
ggtgaattgtttataattattcctccacaaagtacagtttttagtatacttgctcagcca
acatcaattttaactgagcttgctaatctgggggatgatgatagcgttctgttaggagtc
aattcgcggttagatgacgttcaaatagataccttgcaacaattatcaaaacaattatct
ttgccattagtagggacgtctccagttgattatttaaatgctaatgacctttttgctagt
cgggttttacaagcaattgatgccggcgttgagttaaaagatccgacaatagaagcggga
cgaagaggacaacattatcttcattcgaaagaacagattgtccaagattacaatgcaaag
gggcttagtgcagccgcgcaaaagacagttgaagtagcagccctgtgcaacgttgaactt
caatttagggccccagtccttcctcattttaaaaatcaagcagggatatcatcgcaacaa
tatttacgttctctatgtattcaaggattgaaaaaaagacgagttgcaccaggaaaaact
attcaacagtaccaagaacgtttagcgatggaattaaaagtaattcatgaaatgggcttt
gatgattatttcttaattgtatgggatgtaatgaattttgctcaccagcaaaagattacg
accgaccctggacggggatcagctgcgggatcattagttgcctatgccttagcaattaca
gaggttgatcctttgcaatatgacttattatttgaacgctttctgaatccagaacgagcc
caaatgcctgatattgatttagatattcctgataatcggcgtgatgaagtcttgcaatat
gtacatcaaaaatatggtcaccaacgcgtagcccaaattattacttttgggacattggct
gctaaacaggtcgttcgtgatgtgagtcgggtctttaacttaccccgttacgatatgcaa
agattaatcgatgcattaccgcatggccttcacgtgacactcaaagatgcattaaaggag
tcacaacaactaaaaaatcttcttgatgataatcctaaatttcgtttgctgattcaagtt
gcacagcaattagagggattgccgcgtcattattcaattcacgcggcaggtattgtcctt
tctgagcagccattacatgaaattgtgccgttacaagatggtagtgatggcttattaatg
acgcagtttgccaaagacacagtagaagcgttggggctattaaaaatggattttttggga
ttgaagaacctttcaatcatggataacacccttcaaatgattcggcaagaagaccctaat
tttgatttgcaaaaaattaactttaatgattcgttgactcttcaactgttccagcgagga
aaaactgaagggatttttcaatttgaatcaagtgggatcagaaatgtattggtcaatctt
cacccaacgaattttgaagacattgtggcagtgaatgcactttatcgtccgggcccaatg
gaaaatattcctcattttaccgcccgcaaagctggaaaagagaaaattacttatcctgct
ccttcacttgaaaaaattctgggaccaacttacggtattttggtctatcaagagcaggta
atgcagttggcttctgtaatggctggctttaccttaggagaggcggatcttttacgccga
gcaatgagtaagaagaaaaaggccacaatggaggatatgcggacaaaatttattgctggc
gcaacagaacacggctattcagcacaagttgctcaccaggtatttgaatatattgatcgc
tttgctaattatgggttcaatcgctcgcatgcagttgcttattctatgatggcgtttgag
atggcatatttgaaagtccattaccctacagctttttttactgccctaatgaatgcagaa
actaatattgagaaattgaagcgtcacgtgggggatgcaaagcagctcggcgtcaagatt
agtggcccgcgaatcaatataagtgagagtagttttctattacatgatgggacagtttac
tttggcttttctgctattaaaggagtacgtcgtgattttgtcgccgcaattcttgaagaa
cggcaggaaaatggcaaatttacagatcttcgtaattttattacccgcattccagaacgt
tggcaaaagcaagaattaatcgaaccattaatctatagtggggcctttgataatatgggg
tacaatcgagccgagatgattgacgcccttcctaaattaatttctgggattgagttgttt
gccggttttgctagttttgacgatccagctctccaaacggcaatcgaccaacgaaacgaa
ttccctctgttgacccgtttaacgaaggagaatgaatacttaggagtatatctttccggc
cacccggttactcaatattaccaattaggacagcagctccatgcaactaaaattgatgat
ttatacccgaattcagaagcgacgataattgtccttacaaatcacgttaagactatttat
actaaacgtgagcatcgggaaatggcctttgttaatggaacagatgagaccggagcagtt
gatattactgtctttcctaaacaatatcagcagttcaaagagcaactagaaacaaataag
atcttaattgtcagaggccgagtagaatatcgggagggacgaggcctacaattagttgct
aaccaattgcaggatgttaaaaaagttcaacaggagcgccctagtcaacgatgggtttta
cgaatcttaccgtcattagacactgagatggtgcatcgagagttaaataatatttttaat
gagtatcatggttcaattcctgtcttgttgttttatccagcaaacgataagaagatccta
cttgatcaaaaacgatggttaaaaaattctcagaaagcaaaaaaggcgcttgttgccatt
cttggccaagaaaacgttgtcttacaacagcttaatagtaatcactga
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