Limnoglobus roseus: PX52LOC_01823
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Entry
PX52LOC_01823 CDS
T06556
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lrs
Limnoglobus roseus
Pathway
lrs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PX52LOC_01823 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrs03019
]
PX52LOC_01823 (rnr)
03016 Transfer RNA biogenesis [BR:
lrs03016
]
PX52LOC_01823 (rnr)
Enzymes [BR:
lrs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PX52LOC_01823 (rnr)
Messenger RNA biogenesis [BR:
lrs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PX52LOC_01823 (rnr)
Transfer RNA biogenesis [BR:
lrs03016
]
Prokaryotic type
tRNA degradation factors
PX52LOC_01823 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
OB_RNB
OB_HELZ2
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
QEL14922
UniProt:
A0A5C1AAS7
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All DBs
Position
complement(2157473..2159656)
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AA seq
727 aa
AA seq
DB search
MDFTTLILAELARKGYTPLKPKQLAKKLAVGEAAYPEFRKTLKSLVKDGRIEQGKNNHLR
PADQFGSVVGVYRRVQNGNGFVRPHAADGHLVSDIFIREGREKDASTGDEVMVKLTRRAS
QSRDAAGEIIRVVTRATRTFVGTYFEREGEAFVRVDGTAFSHSILVGDPGAKGAKPQDKV
VIDMLKFPTAHDRGEGVITEVLGPLDQPGVDLLTIVRAFGLPEEFPKEALDEARSQADKF
REEVGTRTDFTNDLVVTIDPKDARDFDDAVSVEIDPKTKNWVLTVHIADVAHFAPLGGPL
DAEAKKRATSIYLPRKVIPMFPEVISNGLASLQEGKLRYVKTVRMEFTQAMQKGHVEFGN
GVIRPRKRFHYEEVQAVINSFDGKAEPPTDLAPDVLAMLRRMRDLAALMRKKRFKRGSLE
LSMPEAVLEYDADGRVNGAHFAVNDESHQVIEEFMLAANEAVAEHLTTLGVPFLRRVHPA
PKEEKLEAFADFARILGYPMKRAQDRFELQRLLRLTADKPERAAIHYALLRSLKQATYSP
IQDEHYALASQHYCHFTSPIRRYPDLVVHRLLDRWIRLKKVSADIGEMRMLGDHCSRMER
RAETAERELVKLKLLQYLSTRLGEQLDAVITGVADYGFFAQAEKFPAEGLVHISSLTDDY
YNHDEASHSLEGSRRKKRYRLGDRVRVEVARVDVQRRMLDFRLAGEGPPTSSSRREDGPR
RTPRSSR
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggacttcaccacgctcatcctcgccgaactcgcccgcaaggggtacacgccgctcaag
ccgaagcaactcgcgaagaagctcgcggtcggcgaggccgcgtacccggagttccgcaag
acgctcaagtcgctcgtcaaggacggccgcatcgaacaggggaagaacaaccacctgcgg
ccggccgatcagttcggctccgtcgtcggcgtctaccgccgcgtgcagaacggcaacggg
ttcgtccggccgcacgccgccgacgggcatctggtgagcgacatcttcatccgcgagggc
cgcgagaaggacgccagcaccggcgacgaggtgatggtcaaactcacccgccgggccagc
cagtcgcgggacgcggccggcgaaatcatccgcgtcgtcacgcgggccacccgcaccttc
gtcggcacctacttcgagcgcgagggcgaggccttcgtgcgcgtggacggcaccgccttc
agccatagcattctggtcggcgaccccggtgcgaagggggcgaagccgcaggacaaggtc
gtcatcgacatgctgaagttccccaccgcccacgaccgcggcgaaggggtcatcaccgaa
gtcctcgggccgctcgatcagccgggcgtggacctgctcacgattgttcgcgccttcggc
ctgccggaagagttcccgaaggaggcgctcgacgaagcccggtcgcaggccgacaagttc
cgcgaggaggtcggcacccgcaccgacttcacgaacgatctcgtggtgacgatcgacccg
aaggacgcccgcgacttcgacgacgccgtgagcgtggagatcgacccgaagacgaagaac
tgggtgctgaccgtccacatcgccgacgtggcccacttcgccccgctcggcgggccgctg
gatgcggaagcgaagaaacgggcgacgagcatttaccttccccgcaaggtcatcccgatg
ttcccggaggtgatctccaacggcctcgcgagcttgcaggaggggaagctgcggtacgtg
aagaccgtgcggatggagttcacgcaggcgatgcagaaggggcacgtcgaattcggcaac
ggcgtgatccgcccgcggaagcgattccactacgaggaagtgcaggcggtcatcaactcg
ttcgacggcaaggcagaaccgccgacggaccttgccccggacgttctcgcgatgctccgg
cggatgcgcgacctggcggcgctgatgcggaagaagcggttcaagcgcggctcgctggaa
ctgtcgatgccggaagccgtccttgagtacgacgccgacggccgggtgaacggggcacac
ttcgcagtgaacgacgagagccatcaggtgatcgaggagttcatgctcgcggcgaacgag
gccgttgcggaacacctgacgacgctcggcgtgccgttcctgcggcgggtccacccggcc
ccgaaggaggaaaaactcgaagccttcgccgacttcgcccgcatcctcggctacccgatg
aagcgggcgcaggatcgcttcgaacttcagcggttgctccgcctcacggccgacaagccc
gagcgggcggccatccactacgccctgctccgcagcttgaaacaggccacgtactcgccg
attcaggacgagcactacgcgctcgccagccagcactactgccacttcacgtcgccgatc
cgccgctacccggacttggtcgtccaccggctgctcgaccgctggattcgcctgaagaaa
gtgagtgccgacatcggcgagatgcggatgctcggcgatcattgctcgcggatggaacgg
cgcgcggagacggccgaacgcgagctggtgaagctaaagctgttgcaatacctcagcacg
cggctcggcgagcaactcgacgccgtcatcaccggcgtggccgactacggcttcttcgcg
caagcggagaagttcccggccgaggggctggtccacatttccagcctgactgacgattac
tacaaccacgacgaggcgtcgcactcgctggaaggcagccgtcgcaagaagcggtaccgc
ctcggcgaccgcgtgcgggtggaggtggcccgcgtggacgtgcaacggcggatgctcgac
ttccggctggccggcgaggggccgcctacttcttcttcgcgtcgagaggatggtccgcga
agaacgcccagatcgtctcgttaa
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