Limnoglobus roseus: PX52LOC_03960
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Entry
PX52LOC_03960 CDS
T06556
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lrs
Limnoglobus roseus
Pathway
lrs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PX52LOC_03960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrs03019
]
PX52LOC_03960
03009 Ribosome biogenesis [BR:
lrs03009
]
PX52LOC_03960
Enzymes [BR:
lrs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PX52LOC_03960
Messenger RNA biogenesis [BR:
lrs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PX52LOC_03960
Ribosome biogenesis [BR:
lrs03009
]
Prokaryotic type
rRNA helicases
PX52LOC_03960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QEL16984
UniProt:
A0A5C1AIN9
LinkDB
All DBs
Position
4646038..4647441
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AA seq
467 aa
AA seq
DB search
MESDAITPETDLPTSFPTTDEATPTAETIPDLPPEIITPAESAPKVAFADLKLIRPLFDA
IEHAGYKFATPVQGAVIPHAMGGRDVIGQAQTGTGKTAAFLIPFLNRWRPHTMKGPIGLI
MCPTRELAVQVANEAVKLAPSSRFRTVPVYGGARMGRQLELLAKGCDLVVGTPGRIIDHL
RRGSLSLENVRYAVLDEADRMLDIGFRPDIERILRRCPEQRQTLLMSATVPDTIKRLVHR
YMKNPIHLNMSPSVLTVDKIQQTYFTVDEDKKFDLLQKVVAREQPRQCLIFVERKRWADR
LYRNLKHVVPGVAVIHGDLPQSQREKITAAFRANKVKYLIATDVMSRGIDVEGISHVINY
DLPNDIENYVHRIGRTGRIGRDGVAISFVTPEQGGQLTDIEMTINKLIDRATIEGFESHT
RRERPDDRVRVLSVDGNATEENASEAPPAPEKKAVYGKGGRRYSSRL
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atggagtctgacgctatcacccccgagacggacctacccacctccttcccgacgactgac
gaagccacgcccacggccgaaaccattcccgacctgccgcccgagatcattacgcccgcc
gaatcggcccccaaggtcgccttcgccgacttgaagctcattcggccgttgttcgacgcc
atcgagcacgccgggtacaagttcgccacgcccgtacaaggggcggtcatcccgcacgcg
atgggcggccgtgacgtgatcggccaggcgcaaacgggcaccggcaagacggccgcgttc
ctgatcccgttcctgaaccgctggcggccgcacaccatgaaggggccgatcggcctcatc
atgtgcccgacccgcgaactggccgtgcaggtcgcgaacgaggccgtgaagttggccccg
agtagtcgcttccgcaccgtgccggtgtacggcggtgcccgcatgggccggcaactcgaa
ctgctggcgaagggctgcgacctcgtcgtcggcacgcccggccgcatcatcgaccacctc
cgccgcgggtcgctgtcgctagagaacgtccggtacgccgtcctcgacgaggccgaccgg
atgctcgacatcggcttccggccggacatcgagcgcatcctccgccgctgcccggagcaa
cgccaaacgcttctcatgtcggccaccgtgccggacacgatcaagcggctcgtccaccgc
tacatgaagaacccgatccacctgaacatgtcgccgagcgtcttgacggtggacaagatt
cagcagacgtacttcaccgtggacgaggacaagaagttcgacctgctgcagaaggttgtt
gcccgcgaacagccgcggcagtgcctgatcttcgtcgagcggaagcggtgggccgaccgg
ctgtaccgcaacctcaaacacgtcgtccccggcgtcgcggtcatccacggcgatctgccg
cagtcgcagcgcgaaaagatcacggccgccttccgggccaacaaggtgaagtacctgatc
gccaccgacgtgatgagccgcggcatcgacgtggagggcatctcgcacgtcatcaactac
gacctgccgaacgacatcgagaactacgtccaccgcatcggccgcactggccgcatcggc
cgcgacggcgtggcgatttcgttcgtcacaccggagcagggcgggcagttgaccgacatc
gaaatgacgatcaacaagctcatcgaccgggcgaccatcgaagggttcgagtcgcacacc
cgccgcgaacggccggacgaccgcgtccgggtgctgtcggtggacggcaacgccacggaa
gagaacgcgagcgaagcaccgcccgccccggagaagaaggccgtctacggtaagggcggc
cgccggtacagttcccgactctaa
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