Limnoglobus roseus: PX52LOC_06958
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Entry
PX52LOC_06958 CDS
T06556
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
lrs
Limnoglobus roseus
Brite
KEGG Orthology (KO) [BR:
lrs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lrs03016
]
PX52LOC_06958
Enzymes [BR:
lrs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PX52LOC_06958
Transfer RNA biogenesis [BR:
lrs03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PX52LOC_06958
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
S1
ARM_FBXO47
Motif
Other DBs
NCBI-ProteinID:
QEL19877
UniProt:
A0A5C1AP00
LinkDB
All DBs
Position
7919497..7921008
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AA seq
503 aa
AA seq
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MNEKNNTNDLRAIAHRAMRERGLEPDFPPDAIRQLAGIPANTHEPDPAVRDLRPLPWCSI
DNDTSRDLDQLTVADPLSDGRVKLLVAIADVDALVKPVTPIDRHARANTTSVYTAAQIFP
MLPERLSTDLTSLNENADRLAIIIELVVAADGSILESAVYRAVVRNRAQLAYRSVAAWLV
GSGPVPEKVAKTAGLDRQLRLQDQIARVMKSVRDAHGALDLETIQPEAVLRDGRVVDLRQ
DRQNRAQDLIADFMIAANAASAQFLQKHGRPAFRRIVRTPERWDRIRAVAAGFAEQLPAA
PDSKALAAFLTRRRQADPLRFPDLSLTVVKLLGAGEYVVQLPGEESAGHFGLAVREYSQS
TAPNRRFPDLITQRLLKATLAGVTSPYTPTELAALATHCTAQEDAARKVERQVRKSAAAL
FLSGRVGEVFEALVTGVSDKGTWVRVLTPPVEGRLTAGYQGIDVGDPLKVRLTGLNVERG
FIDFARAEQDRPTANPQRSPAAG
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagaagaacaacacgaacgacctgcgggcgatcgcccatcgggccatgcgggag
cggggactcgaacccgacttcccgccggatgcgatccgccaactggccggcatcccggcg
aacacccacgaaccggacccggccgttcgggacctccgaccactcccctggtgctcgatc
gacaacgacacgtcgcgcgacctggaccagctcaccgtggcggaccccctctccgacggc
cgggtcaaactcctcgtggccatcgcggacgtcgacgcgctcgtcaaacccgtcacgcca
atcgaccgccacgcccgcgcgaacacgacctcggtgtacacggccgcgcaaatcttcccc
atgctgccggaacgcctctcgaccgacttgacttcgctaaacgaaaacgcggaccgactc
gcaatcatcatcgaactagtggtggccgcggacgggtccattctcgagtccgcggtgtac
cgggccgtcgtccgcaatcgcgcccaactcgcgtaccggagcgtggccgcatggctcgtc
ggcagtggcccagtgccggaaaaggtcgcgaagaccgcgggcctggaccggcaactgcgg
ctgcaagatcagatcgcgcgcgtcatgaaatcggtccgcgacgcgcacggcgccttggac
ctcgaaacgatccagccggaggcggtgctgcgggacgggcgggtcgtcgacctccgccag
gaccggcagaatcgcgcccaggatttgatcgccgatttcatgatcgcggccaacgcggcg
tcggcccagttcctccagaagcacggccggccggcgttccggcggatcgttcgcacgccc
gagcggtgggatcgtatccgcgcggtggccgcggggttcgccgagcaactcccggccgcc
cccgactcgaaagccctggccgcttttttgacacgccgccgacaggcggacccactgcgg
ttcccagacctgtcgttgaccgtcgtcaagttgctgggggccggcgagtacgtcgttcaa
ctccccggcgaagagtcggccgggcacttcgggctggccgtgcgggagtacagccagtcc
acagcgccgaaccgccggttccccgacctgatcacgcagcggttgctgaaagcaaccctg
gcgggtgtgacgtcgccgtacacgccgaccgaactcgcggcgctggcgacgcactgcacc
gcgcaagaagacgcggcccggaaggtggagcggcaggtccgaaaatccgccgcggccctg
ttcctgtccgggcgcgtcggggaagtcttcgaggcgctggtgaccggggtgtccgacaaa
ggaacctgggttcgggtcctgacgcccccggtggagggtcggctgacggccgggtatcaa
gggatcgacgtgggcgatccgctcaaagtccggctgacgggcttgaacgtcgagcgcggc
ttcatcgacttcgcgcgggcggaacaggaccggccgaccgcgaacccgcagaggtctccg
gccgcggggtaa
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